Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3059 102 7e-17 seq4 102 7e-17 >seq3059 Length=2231 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || || || ||||| ||||||||||| | |||| | |||||| Sbjct 1410 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 1351 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| | || |||||||| || | || || || || | Sbjct 1350 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGA 1291 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||| || | | ||| || ||| |||||| ||| | ||||||||||| Sbjct 1290 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTT 1231 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||| ||||| ||||| Sbjct 1230 CCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || || || ||||| ||||||||||| | |||| | |||||| Sbjct 270 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 211 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| | || ||||| || || | ||||||||||| | Sbjct 210 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGA 151 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||| || | | ||| || ||| |||||| || | |||||||| || Sbjct 150 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGTAATGGTCTTT 91 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || || ||||| || || ||||| Sbjct 90 CCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || || || ||||| ||||||||||| | |||| | ||| || Sbjct 1638 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 1579 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| |||| | || ||||| || || | || || || || | Sbjct 1578 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTGA 1519 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||| || | | ||| || ||| |||||| ||| | ||||||||||| Sbjct 1518 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTT 1459 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||| ||||| ||||| Sbjct 1458 CCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 >seq4 Length=926804 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || || || ||||| ||||||||||| | |||| | |||||| Sbjct 390710 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 390651 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| | || |||||||| || | |||||||| || | Sbjct 390650 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGA 390591 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||| || | | ||| | ||| ||| || || | || ||||||||| Sbjct 390590 ATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 390531 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 || ||||| || || |||||||||||||| ||||| Sbjct 390530 CCTGTCAAAGTCTTAACAAAAATTTGCATGGTTAAA 390495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419563150179543