Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq21 215 4e-51 >seq21 Length=323752 Score = 215 bits (238), Expect = 4e-51 Identities = 524/788 (66%), Gaps = 12/788 (2%) Strand=Plus/Plus Query 12797 TAACTTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGAC 12856 |||| ||| |||||| |||| | ||| ||| || |||| | ||||| ||| Sbjct 30192 TAACATTAGAAATCAGCGTCTAATGTAAAAACACGTTCCTCCTCTGTGGACATTACACCG 30251 Query 12857 ATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATA 12916 | ||| || ||||| ||| | || ||||| || || ||||| ||||| | || | | Sbjct 30252 AATTTCTGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTCAATTGAGAGA 30311 Query 12917 TTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGT 12976 || |||||||||| || || || || | | ||| |||| ||| | ||||| Sbjct 30312 TTAACCATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACC 30371 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || | || |||||| |||| || || | ||||||| | | |||||||| || Sbjct 30372 AATAGATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATTCCGATC 30431 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | | ||||| | ||| || || | | | | ||||| ||| ||| || || ||| | Sbjct 30432 ATATCAACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCATCTCTAATT 30491 Query 13097 ATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGATAGATGCTTAAACATCATACATGC 13155 || || |||| ||||||| | |||| || | | | |||| | |||||| Sbjct 30492 ATTTCCTTTAT-ACGTTCTTCAGATGGCTTGTTCTCCAAGTAACTGTACATAAGACATGC 30550 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 |||||||| ||| || || ||||||| || | ||| || ||| ||||| || || Sbjct 30551 AAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTGTTAACCCGGG 30610 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 ||| | || ||||| |||| ||| ||||| |||||||| ||||| || || |||||||| Sbjct 30611 CATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAGAATATTCC 30670 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 |||||| |||||||| || || | | ||| ||| | ||| ||||| | ||||| Sbjct 30671 TTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTCGGCAATCCA 30730 Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 || ||||| | ||||| | | | | | | | | || | ||||| || | Sbjct 30731 TCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCGTTGAAGAG 30790 Query 13396 ATAAtttttttCCTTACTG-TCTAAAATATAAGTATCTATCAATAAGCT----ATACATT 13450 | |||| | | | | ||| || ||| ||| | |||||||| | ||||| Sbjct 30791 TTTATTTCTCT-CATCCTGATCACGAAT----GTAGGTTTCAATAAGTTTCGAGTACATC 30845 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || ||||||||||||||| || ||||| |||||||| ||| | | ||||| | ||| Sbjct 30846 TCACTATGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTCGGGGACC 30905 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 || ||||| |||||||||| |||| || |||||||| || || || |||||| Sbjct 30906 TGGACTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATCCGATGCAGCA 30965 Query 13571 aaaaaaGC 13578 || || || Sbjct 30966 AAGAAGGC 30973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430957697031606