Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3059 170 4e-37 seq4548 161 2e-34 seq4 159 8e-34 seq38 114 3e-20 >seq3059 Length=2231 Score = 170 bits (188), Expect = 4e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || |||||||| |||||||| || ||||| ||||| |||||| Sbjct 486 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGCTTTCCA 427 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| || |||||||| || || || || || ||||| |||||||| | ||| Sbjct 426 GCAAAGATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGAATCTTGGATTTG 367 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || |||||||||||| || |||||||| || ||||| | || Sbjct 366 ACATTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTCAAGGTC 307 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||| ||||| Sbjct 306 TTGACAAATATTTGCAT 290 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || || ||||| |||||||| || ||||| |||||||||||| Sbjct 258 GTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCA 199 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| || ||||| || || || ||||||||||| || |||||||| | ||| Sbjct 198 GCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGATTTG 139 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||| |||||||||||| || ||||| ||||| ||||| | || Sbjct 138 ACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGTAATGGTCTTTCCAGTTAAAGTC 79 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 78 TTGACGAAGATCTGCAT 62 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || || || || || || || || ||||| |||||||| || || Sbjct 1414 AAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATC 1355 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||||||||||||||||| || |||||||| || || || || || ||||| Sbjct 1354 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATC 1295 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| | ||| ||||| || | || ||| ||||||||| || || ||||| || Sbjct 1294 TTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGT 1235 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | ||||| || || |||||||| Sbjct 1234 TTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || |||||||| |||||||| || || || || ||||||||| Sbjct 714 GTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCAAGCTGTTTTCCA 655 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || ||||| || || || || |||||||| || || ||||||| || Sbjct 654 GCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTTGACTTA 595 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || |||||||||||| || |||||||| || ||||| | || Sbjct 594 ACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTCAAGGTC 535 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 534 TTAACAAAGATCTGCAT 518 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| | || || || || ||||| || |||||||| |||||||| || || Sbjct 957 AGAACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCC 898 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||||||||| |||| || ||||| || || || || |||||||| || Sbjct 897 TCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCT 838 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||||| || || || || | ||| || |||||||||||| || |||||||| Sbjct 837 TGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTT 778 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || ||||| |||||||| Sbjct 777 TTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 746 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || || || || ||||||||||| || || |||||||| || || Sbjct 1186 AAGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATC 1127 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||||||||||||||| | || ||||| || || || || ||||| || || Sbjct 1126 TTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTC 1067 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| || | || ||||| || | ||| || |||||||||||| || ||||| || Sbjct 1066 TTGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGT 1007 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || || || |||||||| Sbjct 1006 CTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || || || || || || || || ||||| |||||||| || || Sbjct 1642 AAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATC 1583 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||||||||||||||| | || ||||| || || || || || || ||||| Sbjct 1582 CTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATC 1523 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| | ||| ||||| || | || ||| ||||||||| || || ||||| || Sbjct 1522 TTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGT 1463 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | ||||| || || |||||||| Sbjct 1462 TTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 >seq4548 Length=666 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || |||||||| |||||||| || || || |||||||||||| Sbjct 197 GTTGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCGAGTTGTTTTCCA 138 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | || ||||| || || || ||||||||||| || |||||||||| || Sbjct 137 GCGAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTTGACTTG 78 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| |||||| || || || || || ||||| ||||| | ||| Sbjct 77 ACGTTATCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTTTCCAGTTAAAGTT 18 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 17 TTAACAAAGATCTGCAT 1 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || |||||||| |||||||| || || || |||||||||||| Sbjct 425 GTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCGAGTTGTTTTCCA 366 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | || ||||| || || || ||||| ||||| || || ||||||| || Sbjct 365 GCGAAAATCAATCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGACTTA 306 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || ||| |||||||| || || ||||| || ||||| | || Sbjct 305 ACGTTATCAATGGTGTCAGAAGGCTCTACCTCAAGAGTGATAGTTTTTCCAGTCAAGGTC 246 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 245 TTAACAAAGATTTGCAT 229 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || || ||||| |||||||| || || || || ||||||||| Sbjct 653 GTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCAAGCTGTTTTCCA 594 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || ||||| || || || || |||||||| || || ||||||| || Sbjct 593 GCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTTGACTTA 534 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || |||||||||||| || |||||||| || ||||| | || Sbjct 533 ACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTCAAGGTC 474 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 473 TTAACAAAGATCTGCAT 457 >seq4 Length=926804 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || || || || || || || || ||||| |||||||| || || Sbjct 390714 AAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATC 390655 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct 390654 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATC 390595 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| | ||| ||||| || | ||||| ||| |||||||| || || || || Sbjct 390594 TTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGT 390535 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || ||||| || ||||| Sbjct 390534 TTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq38 Length=203164 Score = 114 bits (126), Expect = 3e-20 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||||| || || || ||||||||||| || || || || ||| Sbjct 170979 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCT 170920 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | |||||| || || || || || || ||||||||||||||||| Sbjct 170919 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 170860 Query 104540 GTTTTTACAAATATCTGCATTTTGTGTACAGTATTTATTA 104579 || || || || || ||||||| || || | ||||| || Sbjct 170859 GTCTTAACGAAAATTTGCATTTCGTCTAAA--ATTTAATA 170822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151329019970724