Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq41 192 7e-44 seq5 161 1e-34 seq1 91.5 2e-13 seq3 82.4 9e-11 >seq41 Length=195677 Score = 192 bits (212), Expect = 7e-44 Identities = 505/759 (67%), Gaps = 40/759 (5%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||| ||| |||||| | ||||| ||||| |||||| ||| || |||| Sbjct 83367 ATTGGGATTTCGAAAGTATGGGAATTGGTGGTTTAGATAAAGAATTCTCTGCAATCTTCA 83426 Query 164453 GACGAGCATTTGCTTC--TAGATCAGTTCCTATCGAAATAA-TaaaaaaaTTAGGCTGTA 164509 || |||| || |||| ||||| | |||| | | | | | || |||||||| | Sbjct 83427 GAAGAGCTTT--CTTCAGTAGATTA-TTCCCACCAGAGCATGTTGAACAATTAGGCATGA 83483 Query 164510 AACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTC 164569 |||| | || || || | |||||||||| || |||||||||||||| || | Sbjct 83484 AACACGTCCGTGGTATCCTACTTTATGGACCTCCAGGAACTGGTAAAACATTAATAGCCC 83543 Query 164570 GATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAAT 164626 | || | | || | |||||| | || || ||||| ||||| || ||| || Sbjct 83544 GTCAAATAGGT-AAAATGTTAAATGCCAGAGAACC--CAAAATCGTTAACGGACCTCAAA 83600 Query 164627 TATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTG 164686 ||||| | |||||||| ||||| ||||||||| | ||||| || || || |||| Sbjct 83601 TATTGGATAAATATGTTGGTGAAAGTGAAGCTAATATAAGAAAATTATTCGGTGATGCTG 83660 Query 164687 AAGAAGAA--CAAAAGA-----AAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTT 164739 | || ||| ||||||| | || || |||| | ||| ||||| | || Sbjct 83661 AGGAGGAATTCAAAAGATGTGGTAACA-ATTCAGCT------CTCCATATTATTATCTTC 83713 Query 164740 GATGAGATAGATGCTCTTTGCAAAAAACGTGG----------TGATAATAT--TATTCAT 164787 ||||| || |||||| | || ||| || | || ||| || | | |||| Sbjct 83714 GATGAAATCGATGCTATATGTAAACAAAGAGGAACACAGGCTGGATCATCTGGTGTTCAC 83773 Query 164788 GATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATT 164847 ||| |||| || ||||| | || | ||||| |||||||| || |||| || ||| Sbjct 83774 GATACAGTAGTCAATCAAATCCTAACAAAAATGGATGGTGTTGATCAACTAAACAACATT 83833 Query 164848 TTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGT 164907 ||| || | |||||||| || || ||| | |||||||| || |||||| |||||||| Sbjct 83834 TTAGTTATTGGTATGACAAATAGAAGAGATATGATTGATGAAGCATTATTAAGACCTGGT 83893 Query 164908 CGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTA 164967 || | ||| | |||| || ||| |||||| ||| | | || || | ||||| ||| Sbjct 83894 AGAATGGAAGTACAAATGGAGATATCATTACCTGACGAGAATGGGCGTGTACAAATATTA 83953 Query 164968 AAAGTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAAT 165027 | | ||| || || |||| | | |||| |||| || || |||||||| Sbjct 83954 CACATCCATACAGCAAAGATGAGAGAATACGATAAATTAGGAGAGGACGTTGATTTAAAA 84013 Query 165028 AAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCC 165087 ||| || |||| ||||||| | ||||||||| ||||||| ||||| | || Sbjct 84014 TTAATTGCCAAAAAAACAAAAAATTTTTCTGGTGCTGAGATAGAGGGTTTAGTTCGTGCT 84073 Query 165088 GCTCAATCAACCGC-ATTAAGTCGATGTGTTAAAGTAGA 165125 || ||||||| || ||||| | ||| || ||||| || Sbjct 84074 GCACAATCAAGTGCTATTAA-TAGATTAGTCAAAGTTGA 84111 >seq5 Length=897882 Score = 161 bits (178), Expect = 1e-34 Identities = 413/620 (67%), Gaps = 14/620 (2%) Strand=Plus/Minus Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860 |||||| ||||||| ||| | ||| | |||| | | ||||||||||||||| || | Sbjct 895640 TCGAGTCAATTGTTGTTTCAGAGCATCAGTATGGTTTTTATAAATATGAGCATCGCCAAT 895581 Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920 || |||| ||| ||||| | | | || || | || ||||| | || || || | Sbjct 895580 AGTGTGAACAAAATCACCAGTTGTTATTCCACAAATTTTTGCAATCATATGAGTCAAAAG 895521 Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCT--GCTGATCTTTGATAA 6978 || || ||||| | ||||| || || || || || | ||| |||| | |||||| Sbjct 895520 TGAGTACGAAGCAATGTTAAATGGAACTCCCAAACCAACATCACCGCTG--CGTTGATAC 895463 Query 6979 CATTGACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGT 7038 | |||||| ||| ||| | ||||||||||| | | |||||||||||| Sbjct 895462 AAGTGACAACTTAACTCCCCATCTTGAACATAAAATTGAACTAGTGTATGACATGGAGGC 895403 Query 7039 AAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTT 7098 ||||| | | | | |||||||||||||||||||| | | ||| | ||| | | Sbjct 895402 AAAACCATTTCACCAAGATCAGATGGATTCCAAGCAGATAAGATAATTCTTCT-TGAAGA 895344 Query 7099 GGATTTGTTTTTAATTTTGTTATAATTATTTG-TAATTGATCTATACCCTGACCTTCATA 7157 | ||||| || |||| || | | ||||| || |||||| | || | ||| || Sbjct 895343 AGGGTTGTTCTTTATTTGGTCAATAACATTTGCTAGTTGATCAACTCCTTTTCCTGTGTA 895284 Query 7158 ATTAGTATGACAATTTAT-ATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAG 7216 | || || | | | | ||| ||||| ||||||||||||||||| |||||||||| || Sbjct 895283 GTCAGCATCA-ACTCCCTCATATTTAGCACCAAAATGTCTCCATTGGAACCCATAAACAG 895225 Query 7217 GACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATC 7276 | || |||||||||||| | | | ||||||||| | || | | | | || Sbjct 895224 GTCCCAAATCACCTTCTGGTCTTTCAGTAAATCCTAGACTATCAAGAAACTGTCTACTTC 895165 Query 7277 CATAAGCATCCCAAATATGTACAGAt---ttttttGATAAATTTAAAGAATTTGTAGATC 7333 ||| ||||||||||| | ||| | ||| || ||| | ||| || || Sbjct 895164 CATTTGCATCCCAAATCTTAACACCTCGGGCATTTAATTCTTTT---GCATTAGTGCTTC 895108 Query 7334 CTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGA 7393 | || ||||| ||||||||||| || || || ||||||| || |||| || || | Sbjct 895107 CCGAAATAAACCACAAAAGTTCTTCAACAATACCTTTCCAAAACGTTTTTTTAGTTGTTA 895048 Query 7394 ATAAAGGGAATGTACTTAAA 7413 ||| || | | ||| |||| Sbjct 895047 TTAAGGGCATTATACCTAAA 895028 >seq1 Length=1686976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATT 19417 ||| | || |||||||| |||||||| || |||||||| ||| |||||||| Sbjct 919996 CCTCAGATTGGTGATAAATTTGCTTCAAGGCATGGACAAAAAGGTACAATGGGTATGATG 919937 Query 19418 TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGT-GCCGGATCTTATTATTAA 19476 || ||||||||||||||||||||||| ||||| || || || || || | ||||| || Sbjct 919936 TACCGTCAAGAAGATATGCCTTTTACAAAAGAAGG-ATTGTCTCCTGACATCATTATAAA 919878 Query 19477 CCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| | ||| ||| ||||| Sbjct 919877 TCCTCATGCCGTCCCATCTCGTATGAC 919851 >seq3 Length=1139157 Score = 82.4 bits (90), Expect = 9e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 19326 TAGTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTT 19385 || |||||||| || | ||| | | || ||| ||| |||||||||| ||| | | Sbjct 413095 TAATTAAAATTCAACTTAGACAGACAAGAAGACCAGAATTAGGTGATAAATTTAGTAGTA 413154 Query 19386 TTACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTA 19445 || ||| ||||| |||||| | || | || ||||| ||||||||||||| | Sbjct 413155 GACATGGTCAGAAAGGTGTATGTGGATTAATATCTCCACAAGAGGATATGCCTTTTAATG 413214 Query 19446 AAGATGGTATAGTG-CCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||| || ||| || ||| ||||||| || || |||| || ||||||||| ||||| Sbjct 413215 ATCTTGGAAT-GTGTCCTGATGTTATTATGAATCCTCATGGTTATCCAAGTCGTATGAC 413272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595836970174800