Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq318 152 8e-33 seq268 143 4e-30 seq2226 136 6e-28 seq134 134 2e-27 seq45 127 3e-25 seq214 118 2e-22 seq84 113 7e-21 seq222 91.5 2e-14 >seq318 Length=32442 Score = 152 bits (168), Expect = 8e-33 Identities = 199/270 (74%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||||| |||||||| ||||||||||| || ||||||||| Sbjct 5108 GCAAAACGCCATCGTAAAGTCCTTCGTGATAACATTCAAGGAATCACAAAACCAGCTATC 5049 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | || || || || ||| |||||||| | | |||||||| | Sbjct 5048 CGTCGTCTTGCTCGCAGAGGAGGTGTAAAACGTATCTCTGGACTCATTTATGAAGAAACC 4989 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCG 16610 ||| |||| | || ||| ||| | ||| |||||||| ||||| | || || || | Sbjct 4988 CGTACTGTTCTTAA-ATCTTTCTTGGAGAACGTTATCCGTGATGCCGTTACA-TACTGTG 4931 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||| | ||||||||||| | |||||| |||||||||| | || | |||| Sbjct 4930 AACACGCCAAAAGAAAGACTGTCACTGCTATGGATGTCGTCTATGCTCTTAAGAGACAAG 4871 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | |||| || || ||| |||||| Sbjct 4870 GAAGAACCCTTTACGGATTCGGAGGTTAAT 4841 >seq268 Length=45655 Score = 143 bits (158), Expect = 4e-30 Identities = 195/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||| | | ||||| ||||||||||||||||| || || |||||||| Sbjct 13430 CGCAAAACGCCATCGTAAAGTCCTTCGTGATAACATCCAAGGAATTACAAAACCAGCTAT 13371 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||| | ||||| || || ||| | |||||| | | |||||||| | Sbjct 13370 TCGTCGTCTTGCACGTAGAGGTGGTGTAAAACGTATTTCTGGACTTATTTATGAAGAAAC 13311 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||| | ||| ||| |||| |||||| || ||| || Sbjct 13310 TCGTACAGTTCTTAAGTCCTTTTTGGAGAACGTCATCCGTGATGCCGTCACATATTGTGA 13251 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||| | ||||||||||| | |||||| | || ||||| | ||| | ||||| Sbjct 13250 ACATGCTAAGAGAAAGACTGTCACTGCTATGGATGTTGTTTATGCTCTTAAAAGACAAGG 13191 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | |||| || || ||| |||||| || Sbjct 13190 AAGAACTCTTTACGGATTCGGAGGTTAATTTT 13159 >seq2226 Length=3255 Score = 136 bits (150), Expect = 6e-28 Identities = 184/253 (73%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || ||||||||||||||||| ||||| || ||||||||||| ||||| | || Sbjct 2867 TCTCCGTGACAACATCCAAGGAATCACAAAGCCTGCCATCCGTCGTCTTGCTCGCAGAGG 2808 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| |||||||| | |||| ||||| | ||| ||| | || ||| Sbjct 2807 AGGTGTTAAGCGTATCTCTGGACTTATCTACGAAGAAACCCGTACCGTTCTTAAATCCTT 2748 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CGAGCACGCTAAACGTAAGACT 16630 | | ||| || || | ||||||| | ||| |||| || ||||| ||| | || || Sbjct 2747 CTTGGAGAATGTCATTCGTGATGCTGT-CAC-ATACTGTGAACACGCCAAAAGAAAAACC 2690 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 |||||| | |||||| |||| ||||| | || | ||||| | | ||||||| || Sbjct 2689 GTCACCGCTATGGATGTCGTTTATGCTCTTAAGAGACAAGGAAGAACTCTTTATGGATTC 2630 Query 16691 GGAAGTTAATCTT 16703 ||| |||||| || Sbjct 2629 GGAGGTTAATTTT 2617 >seq134 Length=85599 Score = 134 bits (148), Expect = 2e-27 Identities = 195/270 (72%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| |||||||| ||||||||||| || ||||||||| Sbjct 81342 GCAAAACGCCATCGTAAAGTTCTTCGTGATAACATTCAAGGAATCACAAAACCAGCTATC 81283 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||| | || || || || ||| |||||||| | |||||||||| | Sbjct 81282 CGCCGTCTTGCTCGTAGAGGAGGTGTTAAACGTATCTCTGGACTCATCTATGAAGAAACC 81223 Query 16553 CGTGATGTTTTGAAGATCTTCCTCA-AGACCGTTATCCATGATG-CTTTCCACTATACCG 16610 ||| ||| | || ||||| || | | | |||||||| ||||| | || || || | Sbjct 81222 CGTACTGTCCTTAA-ATCTTTCTTAGAAAACGTTATCCGTGATGCCGTTACA-TACTGTG 81165 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || |||||| | || || || || | |||||| | || ||||| | || | |||| Sbjct 81164 AACATGCTAAAAGAAAAACAGTTACTGCTATGGATGTTGTTTATGCTCTCAAGAGACAAG 81105 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | |||| || || ||| |||||| Sbjct 81104 GAAGAACACTTTACGGATTCGGAGGTTAAT 81075 >seq45 Length=187759 Score = 127 bits (140), Expect = 3e-25 Identities = 191/269 (71%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| || |||||||||||||| || || || ||||| Sbjct 44942 GCAAAACGCCATCGTAAAGTTCTTCGTGACAACATCCAAGGAATTACAAAACCCGCTATT 45001 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| || || | ||||| || || ||| | |||||| | |||||||||||| Sbjct 45002 AGACGTCTTGCACGCAGAGGTGGCGTTAAACGTATTTCTGGACTCATCTATGAAGAGACA 45061 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| | || ||| ||||| | | || || | ||||||| | |||| || Sbjct 45062 CGTACTGTTCTCAA-ATCATTCCTTGAAAATGTCATTCGTGATGCTGTAACCTATTGTGA 45120 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||||| | || ||||| || | |||||| | || ||||| | ||| | ||||| Sbjct 45121 ACATGCTAAAAGAAAAACTGTTACAGCTATGGATGTTGTATATGCCCTCAAAAGACAAGG 45180 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| |||||| | |||| Sbjct 45181 AAGAACTCTTTATGGATTTGGAGGATAAT 45209 >seq214 Length=60232 Score = 118 bits (130), Expect = 2e-22 Identities = 189/269 (70%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||| || |||||||| |||||||||||||| ||||||||| Sbjct 631 GCAAAACGCCATCGTAAAGTTCTCCGTGATAACATTCAAGGAATCACCAAACCAGCTATC 572 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||| | || || || || ||| | |||||| | |||||||||| | Sbjct 571 CGTCGTCTTGCCCGTAGAGGAGGTGTAAAACGTATTTCTGGACTCATCTATGAAGAAACC 512 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| || | || ||| ||| | | | || || | ||||||| | ||| || Sbjct 511 CGTACAGTCCTCAA-ATCTTTCTTGGAAAATGTCATTCGTGATGCTGTAACGTATTGTGA 453 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || ||| |||||||| | || || || | || | ||||| Sbjct 452 ACATGCCAAGAGAAAGACCGTTACCGCCATGGATGTTGTTTACGCTCTTAAGAGACAAGG 393 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| || ||| |||||| Sbjct 392 AAGAACCCTTTATGGATTCGGAGGTTAAT 364 >seq84 Length=122160 Score = 113 bits (124), Expect = 7e-21 Identities = 188/269 (70%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||| || |||||||| |||||||||||||| |||||||| Sbjct 62877 GCAAAACGCCATCGTAAAGTTCTCCGTGATAACATTCAAGGAATCACCAAACCAGCTATT 62818 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || ||| | || || || || ||| | |||||| | |||||||||| | Sbjct 62817 CGCCGTCTTGCCCGTAGAGGAGGTGTAAAACGTATTTCTGGACTCATCTATGAAGAAACC 62758 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| || | || ||| ||| | | | || || | ||||||| | ||| || Sbjct 62757 CGTACAGTCCTCAA-ATCTTTCTTGGAAAATGTCATTCGTGATGCTGTAACATATTGTGA 62699 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | || ||||||||| |||||||| | || || || | || | ||||| Sbjct 62698 ACATGCCAAGAGAAAAACTGTCACCGCCATGGATGTTGTTTACGCTCTTAAGAGACAAGG 62639 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| || ||| |||||| Sbjct 62638 AAGAACTCTTTATGGATTCGGAGGTTAAT 62610 >seq222 Length=57187 Score = 91.5 bits (100), Expect = 2e-14 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||| || |||||||| |||||||||||||| |||||||| Sbjct 57073 GCAAAACGCCATCGTAAAGTTCTCCGTGATAACATTCAAGGAATCACCAAACCAGCTATT 57132 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAG 16547 || ||||| || ||| | || || || || ||| | |||||| | ||||||||| Sbjct 57133 CGCCGTCTTGCCCGTAGAGGAGGTGTAAAACGTATTTCTGGACTCATCTATGAAG 57187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070900014179