Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq21 235 9e-57 >seq21 Length=323752 Score = 235 bits (260), Expect = 9e-57 Identities = 522/772 (68%), Gaps = 12/772 (2%) Strand=Plus/Plus Query 193636 TTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGA 193695 || |||| |||| || || |||||| || |||||||||||||||||| ||||| Sbjct 162290 TTCAACCAACTGAAATTTACCATCTTGCAGCACAAAGTCATGTTAAAGTTAGTTTTGATT 162349 Query 193696 TGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTC 193755 | || || ||||| | | || ||||| | || || | ||| | || || || | Sbjct 162350 TACCTGAATATACAGCAGAGGTAGATGCAGTTGGTACATTAAGACTTCTCGATGCTATA- 162408 Query 193756 GTATGTTGGGAA-TGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTAT 193814 ||| ||| | | | | | || | | || || || |||||| ||||| ||| Sbjct 162409 GTAGCTTGTAATCTCCAACACAAAGTCAGATTTTACCAAGCTTCTACCTCAGAACTTTAT 162468 Query 193815 GGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTAT 193874 || || | || | || | | ||| || ||||||||| ||||||| ||| ||| Sbjct 162469 GGAAAAGTCCAAGAAATCCCCCAAAAAGAGACAACACCATTTTATCCACGAAGTCCATAT 162528 Query 193875 GGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTC 193934 | |||||||| ||||| | ||||||||| || || ||||||||||| |||||||| | Sbjct 162529 GCAGTAGCAAAATTGTACGCTTATTGGATAATTAAAAATTATCGTGAAGCATATGGAATA 162588 Query 193935 CACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTA 193994 ||| | ||||||| | || ||||| ||||| |||||||||||| | | |||||| Sbjct 162589 TTTGCTTGCAATGGTATTTTATTTAATCATGAATCACCAAGAAGAGGTAATAACTTTGTA 162648 Query 193995 ACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTAT 194054 || | || |||||| | | || |||| || | | || | | |||| | |||| Sbjct 162649 ACAAGAAAAATTACAAGGGCTGTAGCTAAAATTAGTATAGGTGTTC--AAGAAACATTAT 162706 Query 194055 --CTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGA 194112 ||||||||| | ||||||| | |||||||| || ||||| || ||||||||||| | Sbjct 162707 TACTTGGTAATTTGGATGCTAAACGTGATTGGGGTCATGCAAAAGAGTATGTTGAAGCTA 162766 Query 194113 TGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGT 194172 ||||| ||| | ||||| |||||||| ||||| | ||| |||||||||||| || Sbjct 162767 TGTGGAGAATTCTTCAACACGATGAACCAGATGACTTTGTTATTGCTACAGGTAAAACTC 162826 Query 194173 ATTCTGTTAGAGACTT-TGTGAATGAAGCAGCACCCTATTTTGGTTTTAAACTAGAATGG 194231 | ||||||||| || ||| ||| || || | ||||| | ||| || |||| Sbjct 162827 AAAGTGTTAGAGATTTCTGT-AATTTGGCTTTTGCCGAAATTGGTATAAAATTAATATGG 162885 Query 194232 ATGGGTGAAGGTGAAGACGAGATTGCTCTCGATTGGAATACTaaaaaaaCAATCATCGGA 194291 |||||||| | | ||| ||| | | || || || |||| | | Sbjct 162886 CAAGGTGAAGGAGTTAATGAGGTTGGTATTGAAGAGAGCACAGGAAAAGTTCGTGTACGT 162945 Query 194292 ATCAACCCTAGATACTTCAGACCTGCAGAAGTGGA--TTCATTATTAGGTGATGCTACAA 194349 | | || | |||| ||||| | ||||| || ||| | ||| || ||| | |||| Sbjct 162946 GTTGATCCAAATTACTATAGACCAACTGAAGTTGACCTTC-TCATT-GGAGATCCAACAA 163003 Query 194350 AAGCAAAAGAAGTTTTAGGTTGGGAACCTAAGATTAAATTTAAAGAATTGGT 194401 |||| |||||||| |||| |||||| |||| ||| ||| || | ||||| Sbjct 163004 AAGCTAAAGAAGTACTAGGATGGGAAGCTAAAGTTACATTAGAACAGTTGGT 163055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807507725848680