Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq21 179 4e-40 >seq21 Length=323752 Score = 179 bits (198), Expect = 4e-40 Identities = 414/618 (67%), Gaps = 18/618 (3%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| |||||||| ||||||| |||||| || || | | | ||||| | || | ||| Sbjct 30197 TTAGAAATCAGCGTCTAATGTAAAAACACGTTCCTCCTCTGTGGACATTACACCGAATTT 30256 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT- 21245 || || ||| ||| | || || || ||||| || || ||||| | ||| | |||| Sbjct 30257 CTGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTCAATTGAGA--GATTA 30314 Query 21246 -CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 |||||||||||||||| || | || ||| | | || | |||| |||||| ||| Sbjct 30315 ACCATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACCAAT 30374 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 | ||| || ||| | || ||||| | ||||||||| | ||||||| ||||||| Sbjct 30375 AGATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATTCCGATCATA 30434 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 | ||||||||||| | || | | | ||||| ||| ||||| || |||||| Sbjct 30435 TCAACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCATCTCTAATTATT 30494 Query 21425 TTTATTATCC------TAGATGTACTAGGGGGATACAA-TAATTGTTTAAACATCAAACA 21477 | |||| | ||||| || | | ||| ||| ||| |||| | ||| Sbjct 30495 TCCTTTATACGTTCTTCAGATG-GCT--TGTTCTCCAAGTAACTGT----ACATAAGACA 30547 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||||| || || || ||||| | || || ||||| ||| |||||| || Sbjct 30548 TGCAAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTGTTAACCC 30607 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 |||||| || || | || || | ||| ||||| | ||||||| || || ||||| || Sbjct 30608 GGGCATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAGAATAT 30667 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 || ||||| || ||||| |||| || ||||| || | |||| | ||| || || Sbjct 30668 TCCTTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTCGGCAAT 30727 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 |||| || ||||| | || || | | | || || || | ||| | ||| || || Sbjct 30728 CCATCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCGTTGAA 30787 Query 21718 AAGATGAtttttttCATC 21735 || | |||| | ||||| Sbjct 30788 GAGTTTATTTCTCTCATC 30805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531869530881720