Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 452 5e-122 seq64 230 3e-55 seq108 87.8 2e-12 >seq1 Length=1686976 Score = 452 bits (500), Expect = 5e-122 Identities = 1236/1870 (66%), Gaps = 65/1870 (3%) Strand=Plus/Plus Query 62015 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62074 ||| ||||| || | || ||| |||||||| ||||| | ||| |||| || ||||| Sbjct 914631 TGCCGGTTTAGTTCTTAAATAATACATTCCTGTTTTCAAACCATTTTTCCAACCATAAAA 914690 Query 62075 ATGCAT---ACTCGTTAGTTTGGAATAACTCGGATCTGCT-ATATGGATATTCATAGATT 62130 |||||| ||| || | |||| | || ||| | | ||| | ||| | |||| Sbjct 914691 ATGCATTGAACTACATATTCC---ATAAGTTGG-TCTATTTACATGAAGATTAAGTGATT 914746 Query 62131 GACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAA 62190 || |||||| | |||| || | || ||||||| || || | |||||||||| Sbjct 914747 GAGATTGATCAACAAAGGGACCACGATCAATTGCCATTTCAATAATAGCTTTTTGTGGAA 914806 Query 62191 TTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAA 62247 ||||||||| ||||||||||| | | |||| | ||||| | | |||| |||| Sbjct 914807 TTTCCCAAACAGTTTTATAAAGTTCTCTGATATGTAATGGAATATCGCATATATTTTGAA 914866 Query 62248 TGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 62307 | || ||| || | | || || ||| || || || ||||| | | | || Sbjct 914867 TAGACCCATTATTTTCAATTATTTGATTAAGAATTTCCTCGTTCCAAA---TACCAAGGG 914923 Query 62308 T---TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCC 62364 | |||| ||| |||||||| | ||| || | |||||| || ||||| || || | | Sbjct 914924 TAATTAAATCTCGTAGGAGATGAGTATTTACAATTTGAAAATCACCAGATAAAACCCGTC 914983 Query 62365 GAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAG 62424 || || | ||| || || ||||| | || |||||| | || | ||| |||| | Sbjct 914984 TTGTATATAAATTTGATGTGTATGGTTCAATAGATTCATTACTGCCAAGAATCTGAGATG 915043 Query 62425 TTGATGCAGTCGGCAT---AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 62481 | || ||||| ||||| || | | | |||| || || | || || || | | Sbjct 915044 TAGAAGCAGTGGGCATTAAAGATACTAACAATGAATTA---CGAATGCCAAATTTAGAAA 915100 Query 62482 TTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNN 62541 |||| || || | | || ||||||||| | || || ||| Sbjct 915101 TTTTCTCCTTCAAACTTTTCCAATTCCATAAATTGCTTGGAGTAACACCCCACATGTCAT 915160 Query 62542 NTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCT 62601 || ||||| || ||| | ||||| || |||| || || | ||| | ||| Sbjct 915161 ACTGAAGAATTCCTTTAGATACAGGTGATCCATCAAATGTTTCATAGGATCCATGAATCT 915220 Query 62602 CAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTAT 62661 |||| |||||| ||||| | |||||| | |||||| ||||| ||||| ||||||| Sbjct 915221 TTGCTAATTCACAGGAAGCCTCAAGTGCACCATGATAAATAGTTTCAAAGATTTTCTTAT 915280 Query 62662 TTAGATCTTGTGCTTCCAG-GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 | |||||| ||||| | | | | ||||||||| || | ||| | ||| || || || Sbjct 915281 TGAGATCTCTAGCTTCTGGTGATGT-AAATGGATATTTCATGAGTAAAAATGCATCTGCA 915339 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 | |||||| || ||||| || ||||| | |||| | |||| || | || || Sbjct 915340 AGTCCTTGTACTCCAATTCCAATAGGACGATGTTTAGTATTTGATAAACGTGCCTCCTCC 915399 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATT-TCTGACAATTACTTTGACCAC 62839 | ||||||| ||||||||| |||| || || | ||| | || ||| |||| ||| Sbjct 915400 AGTGGATAATGATTAATATCAATAACCTTGTTCAAATTCTTTGTCAAAATTTTTG-CCAT 915458 Query 62840 ATCCTTCAG---TTTGAGAAAATCAAATCGCCCAT----CTATT--------ACAAACAT 62884 | | || ||| ||||||||| | | || || ||||| | Sbjct 915459 GTTATGAAGACGTTT---AAAATCAAAAACACGTTTTTTCTCTTTAATCACGACAAAATT 915515 Query 62885 GTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62944 || | |||| ||| ||| ||||||||| || || ||||||| | | |||| | Sbjct 915516 ATTAAGTGCAATAGACCCCAAATTACAAACAGCAACTTCATTAGGGGAAGAAAATTGAAC 915575 Query 62945 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63004 || |||| |||||||| ||| || || ||||||||||||||||||||||| || Sbjct 915576 AATTTCAGCACAAAGATTTGAACATTTTATTGTTCCTAAATTTTGTTGATTACTTTTACG 915635 Query 63005 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 |||||| |||||| ||||| || ||||| |||| || || ||||||||||| ||| Sbjct 915636 GTTACAATGATCCTTGTAAAGCATATATGGAATACCCGTCTCTATCTGAGATTCACAAAT 915695 Query 63065 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAG 63124 | | ||| | || || |||| | | || ||| | || || || ||| Sbjct 915696 CTTCTGCCAAATATATCTGGCTTTTACTT--GTTTCCTATAACGATTTTCATTTTCATAT 915753 Query 63125 TGTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 63182 |||| || | | || || || || || || || || | || |||||||||| Sbjct 915754 TGTACGTAAAGTTTATCAAAATCATCACCAAAACAATCATCAAGACCCGGACATTCATTA 915813 Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAAT 63241 |||||||| |||||||| | | || | |||| | ||||||||||| | ||| |||| Sbjct 915814 GGACACATTAACGACCAATGTGAATCG-CTTTCAACACGTTTCATAAATAAATCTGGAAC 915872 Query 63242 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 |||||| | ||||| ||| | | ||| | ||| || |||||| |||||||| | Sbjct 915873 CCAAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTCCTGTGTTCTTTTTTAA 915932 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 || || || |||||||| | |||||| |||||||| ||||| || | | ||||| Sbjct 915933 CTCAAGAAATTGGATAATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCACCAGG 915992 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 | ||| || || || ||||| | || | | | || |||| ||||| | |||||||| Sbjct 915993 TCTTTTATTGCCACCTTGATCAACATAACGAACAGTACTATTGTAAACACGTAACATTGG 916052 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 || | ||| ||||| ||||| || || || ||| | ||| ||||||| || | Sbjct 916053 AACCAAACCATTTGAAGATCCATTAGTTCCAGAAATAAATGATCCTGTGGCACGGATTGT 916112 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 ||| || || |||| ||||| ||| | || || || | || ||||| ||||| || Sbjct 916113 ACTGATACTTAATCCTACCCCCCCAGCCGTCTTTGAAATAACAGCACATCGCTTTAAAGT 916172 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTT 63600 ||||||||| || || || |||||| |||| ||||| | ||| ||| | | | | Sbjct 916173 GTCATAGATTCCTTCAATAGAATCATCACTCATCGTTAA-CAAAAAGCAGGAACAAAGCT 916231 Query 63601 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63660 | | || || || ||||||||||| || ||||| | || |||| | || | Sbjct 916232 GAGGTCGTAGGGTACCAGCATTAAATAACGTTGGAGATCCATGGATAAAAAGTCGTTTTG 916291 Query 63661 AAAGTAGAT-TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63719 | | || || |||| |||| |||||| || | ||||| |||||| || | || Sbjct 916292 ACA-TATATCTGTATGTCTGAATAGCAGATGCAATATCTTCACCATGAATACCAATGGCA 916350 Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63779 |||||||| | ||| || |||||||||||||| || || || ||||||||||| || || Sbjct 916351 ACACGCATAAGCATATGTTGAGGTCTTTCAACAATTTTATTATTTATTTTCAATAAATAT 916410 Query 63780 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA---TGAAAAGTCTCGTTCGTAAA-- 63834 ||| ||| || || ||||| ||||| || |||| || ||| |||| || |||| Sbjct 916411 GATCGTTCTAATGTCTTAAATCCAAAGTA--TGTAAAGTGGAAA-TCTCTTT--TAAATC 916465 Query 63835 TAATAACCGA 63844 ||||||| || Sbjct 916466 TAATAACTGA 916475 >seq64 Length=153875 Score = 230 bits (254), Expect = 3e-55 Identities = 435/629 (69%), Gaps = 22/629 (3%) Strand=Plus/Minus Query 62567 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62626 ||||||| |||| || || || ||||| || ||||| | |||||| ||||| || Sbjct 123184 CGATCCTTCATAAGTTTCATAAGGTCCATCACGTTCAGCCAATTCACATGAAGCCTCCAA 123125 Query 62627 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 62686 ||||| | ||||| |||||||| |||| ||||| || |||| |||| ||| | Sbjct 123124 GGCACCATGGTAAATTGTTTCGAAAATCTGTTTATTAAGTTCTTTAGCTTG-AGGTGAGG 123066 Query 62687 -AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAG 62745 ||||||||| | | ||| || || || || || || ||||||||||||||||| || | Sbjct 123065 TAAATGGATATCTCATGAGCATGAATGCATCTGCCAAACCTTGAACACCAATACCTATTG 123006 Query 62746 GTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATA 62804 | | |||||| ||||||| ||| | ||||||||||| || |||||||| | ||| ||| Sbjct 123005 GACGGTGTCTCATATTAGA-ATTCCTAGCTTCTGGAACTGGGTAATAATTCACATCGATA 122947 Query 62805 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAG-AAAAT---- 62859 || ||||| | ||| ||| | | ||| | |||| | || ||||| ||||| Sbjct 122946 ATCTTATTTAAATTCCTGGTCAAAATTTTAGCAACATAGTGGAG-TTGAGTAAAATTGAA 122888 Query 62860 --CAAATCGCCCA---TCTAT---TACAAACATGTTCAAGGCAACAGATGCCAGATTACA 62911 || | |||| ||||| ||||| | || | |||| ||| | |||||||| Sbjct 122887 AACAGGTTTCCCATTTTCTATATCAACAAATCTATTGAGAGCAATAGACCCTAGATTACA 122828 Query 62912 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62971 || || || |||| | ||||| | ||||| || || |||||| |||||| Sbjct 122827 TACAGCAACTTCATCTGGTGAACAATATTCAACGATCTCGGTACAGAGATTAGAACACTT 122768 Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 ||||||||| | ||||||||||||||| || ||||| ||| ||||||| ||| | Sbjct 122767 GATAGTTCCAAGATTTTGTTGATTACTTTTCCGATTACAATGATCTTTATAAACCATGTA 122708 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 63091 || || ||||||||||||||| ||| |||| || ||| | |||| || || || Sbjct 122707 AGGTGTGCCAGTTTCAATCTGACTTTCACAAATCTTTTGCCAAATAACTCTTGCTTTAAT 122648 Query 63092 TATAGATTTGTATCTCCTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCT 63149 | | ||| | | | |||||| | || ||| | || ||| ||||| || || Sbjct 122647 --TTGCTTTCTGTAGCGTTTCTCCTCCTCATATTTGATGTATAATTTCTCGAATTCATCA 122590 Query 63150 CCCCAAACATTGTCCAATCCAGGACATTC 63178 |||||| || || | ||||||||||| Sbjct 122589 CCCCAACAATCCTCAAGCCCAGGACATTC 122561 Score = 181 bits (200), Expect = 1e-40 Identities = 482/729 (66%), Gaps = 8/729 (1%) Strand=Plus/Minus Query 63393 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCG 63452 || || |||||| |||| |||||||||||||| | || |||||| | ||||| || || Sbjct 122538 GCTGTATTATTAAAAACCCTCAACATTGGAATCAATCCATTTGATGTCCCATTTGTCCCA 122479 Query 63453 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512 ||| | ||| | || | |||| || || || || || ||||| | Sbjct 122478 CCAATAAATGAACCATTAGCTCTAATACAGTGAACATTTAAGCCAATACCACCTGCAGAT 122419 Query 63513 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATC 63572 || ||||| || |||||| | || | ||||| || || || ||||| |||| | | Sbjct 122418 TTCGAGATCAAAGCGCATTGCTTAAGTGTGTCGTAAATCCCTTCTATTGAATCACCAGCC 122359 Query 63573 AT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63631 || ||||| ||||| || |||| || |||| ||||||||||| || ||||| || Sbjct 122358 ATTGTTAATAAGAAA-CATGAGGACAACTGAGGACGCCTAGTTCCCGCGTTGAATAAAGT 122300 Query 63632 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63691 |||||||| || || ||||| || | ||| | || ||| |||||||| | || | Sbjct 122299 TGGAGAAGCATGAGTGAACCACTTCTGAGACATATAATCGTAAGTCTCAATGACAGAATT 122240 Query 63692 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63751 ||||| | ||||| || || || |||||||| || | || |||||||| || | Sbjct 122239 AATATCTTCTCCGTGAATCCCAACAGCAACACGCATCAATAGATGTTGAGGTCTCTCGGC 122180 Query 63752 GATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63811 || || ||||| || || | || || ||||| || || ||||| ||||| Sbjct 122179 AATTTTCCCATTTATCTTTAAAAGATAAGAACGCTCCAACGTCTTGAAACCGAAATAAGA 122120 Query 63812 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC 63871 | ||| || | | |||| ||| | ||||| |||||||| | || | Sbjct 122119 AAAGTCAAAATCCCTGTTATAAACAATTGCAGAGTTCAGTTTATCAGCGTTCTTCAGGAT 122060 Query 63872 TATATCCATGGTGATACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 63929 ||||| ||| | ||| | || || || ||| || | || || Sbjct 122059 GATATC--GTGTGTTTCTTTACTTATCATTGGCATATGAACTCCTGTAATATTATGGCGG 122002 Query 63930 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 63989 ||||| ||||||| ||||| |||||| || || ||||||| || || | ||| Sbjct 122001 TAGTTATATAAATCATCCATTACTTCAGAGAAACTCTTCTTTGTTTGTTTATGCATGTTT 121942 Query 63990 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG-TGGC 64048 || | ||| ||||| || |||| || |||||||| ||||| ||| || || | | || Sbjct 121941 GAAATGGCGATTCTTGCTGCTAATATAGCATAATCAGGATGAATTGTTGT-CATGTTAGC 121883 Query 64049 TGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTG 64108 ||| | ||| ||||| ||| | || || || ||||||| ||| |||||||| | ||| || Sbjct 121882 TGCAACTTCTGCTGCAAGATTATCTAACTCAACCGTTGATACACCATTATACAGTCCCTG 121823 Query 64109 AATAACCTT 64117 ||||| || Sbjct 121822 GATAACTTT 121814 Score = 102 bits (112), Expect = 1e-16 Identities = 234/344 (68%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || ||||| || | || |||||||| |||||||||| || | |||| |||| |||| Sbjct 123684 GCAGGTTTAGTTCTTAAGTAGTACATCCCCGTTTTTAATCCACGTTTCCAACCGTGAAAA 123625 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCT-GCTATATGGATATTCATAGATTGACT 62134 |||||| | | | ||| || ||| || | ||| | || | ||||| Sbjct 123624 TGCATAGAACTACAAATTGCATATGATGG-TCTAGCCACATGAAGGTTAAGGGATTGTGA 123566 Query 62135 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTT 62193 |||||| ||||| || || | || |||||||| | || || ||||| ||| |||| Sbjct 123565 TTGATCAATGAAAGCACCACGATCAGCAGCCATCTCAATAATA-TCTTTCTGGGAGATTT 123507 Query 62194 CCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATG 62249 |||| | ||||||||||| ||| |||||||| | || | ||| |||| || || Sbjct 123506 CCCATACAGTTTTATAAAGCTC-TTTAATATCATTGGGTATTTCTTTTATATTTTGGATA 123448 Query 62250 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62309 |||||| ||| || || || |||| | | || || ||||||| || || || Sbjct 123447 GATCCATTATCAGCTATTATTTCATTCATTAGTTCTTCGGTCCATAAGTTAAGTTCAATT 123388 Query 62310 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGA 62353 ||| || |||| ||||| ||||| || | ||| || || ||||| Sbjct 123387 AAATCTTTAAGAAGATGTGGATTTACAATTTGGAAATCACCAGA 123344 >seq108 Length=97238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 28464 ACCCAATTCTTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAAT 28523 ||||| ||||||||| | ||| | |||| ||||||||||||| || || |||| || || Sbjct 87570 ACCCATTTCTTTGACTTCAGTCAATGATTTCCAATCCATGTTTGCACTACCTATGTAGAT 87629 Query 28524 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCT---CCTAGGATATTTGT 28580 |||| | | ||| ||||||||||| ||||| | ||||||| || |||| | ||| Sbjct 87630 ATGTTTTTGGTCAACAATCCAAAATTTGGTATGTAAAACTCCTGAACCAAGGAGGTGTGT 87689 Query 28581 AA 28582 || Sbjct 87690 AA 87691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622910578491480