Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4548 131 2e-25 seq3059 107 2e-18 seq4 95.1 1e-14 >seq4548 Length=666 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| ||||||||||| | ||||| | ||| | ||| | Sbjct 1 ATGCAGATCTTTGTTAAAACTTTAACTGGAAAGACCATCACTCTTGAAGTGGAACCTTCT 60 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | ||||| ||||||| ||||||||||| || || || || ||| Sbjct 61 GATACCATTGATAACGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 120 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| || || ||||||||||| |||| |||| | ||||| ||| Sbjct 121 CAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAAC 180 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||| ||| |||| |||| || | ||| | ||||| Sbjct 181 ATTCAAAAGGAATCAACTCTCCACTTGGTTCTCCGTCTTCGTGGAGG 227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || ||||||||| | ||||| | || |||| | Sbjct 229 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAAACTATCACTCTTGAGGTAGAGCCTTCT 288 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || |||||| |||||||| || || || || || ||| Sbjct 289 GACACCATTGATAACGTTAAGTCAAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAA 348 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| || || ||||||||||| |||| |||| | ||||| ||| Sbjct 349 CAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAAC 408 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| || || | || ||||||| Sbjct 409 ATCCAGAAAGAGTCAACCCTTCACTTGGTCCT 440 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||||||| | || || |||| ||||| | Sbjct 457 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 516 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || |||||| ||||||||||| || || || || ||| Sbjct 517 GACACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 576 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || ||||| || || |||| |||| || || || ||| Sbjct 577 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAAC 636 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTC 26978 || ||||| || || ||| | ||| ||||| Sbjct 637 ATCCAAAAGGAGTCAACTCTTCATTTGGTC 666 >seq3059 Length=2231 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || ||||||||| | || || |||| ||||| | Sbjct 290 ATGCAAATATTTGTCAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 349 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| |||||| || || || ||||| || || |||||| Sbjct 350 GACACCATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAA 409 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | || || ||||| ||||||| |||| || ||||| ||| Sbjct 410 CAAAGATTAATCTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTCTCTGACTACAAC 469 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| || || | ||| ||||||| Sbjct 470 ATCCAGAAAGAGTCAACCCTTCATTTGGTCCT 501 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| || ||||||||| | || || | ||| ||||| | | Sbjct 1202 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1261 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| |||||| || || || ||||| || || |||||| Sbjct 1262 GACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAA 1321 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || |||||||| ||||||| |||| || || || ||| Sbjct 1322 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 1381 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || ||| | ||| |||| || Sbjct 1382 ATCCAAAAGGAGTCAACTCTTCATTTGGTTCT 1413 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || ||||||||||| | || || | || ||||| | | Sbjct 62 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCC 121 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| |||||| ||||||||||| || || || || ||| Sbjct 122 GACACTATTGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 181 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || |||||||| ||||||| |||| || || || ||| Sbjct 182 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 241 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || | ||| ||||||| Sbjct 242 ATCCAAAAGGAGTCAACCCTTCATTTGGTCCT 273 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || ||||||||||| | || || | || ||||| | Sbjct 974 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCT 1033 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || ||| ||||| |||||||| || || || ||| Sbjct 1034 GACACCATCGATAATGTCAAGTCGAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAA 1093 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || |||||||| ||||||| |||| | ||| ||||| Sbjct 1094 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCCGATTATAAT 1153 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || || ||| | ||| |||| || Sbjct 1154 ATTCAAAAGGAGTCAACTCTTCATTTGGTTCT 1185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||||||| | || || |||| ||||| | Sbjct 518 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 577 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || |||||| ||||||||||| || || || || ||| Sbjct 578 GACACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 637 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || ||||| || || |||| |||| | ||||| ||| Sbjct 638 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAAC 697 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| || || | ||| ||||||| Sbjct 698 ATCCAGAAAGAGTCAACCCTTCATTTGGTCCT 729 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||||||| | || || |||| ||||| | Sbjct 746 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 805 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || |||||| ||||||||||| || || || || ||| Sbjct 806 GACACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 865 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | || ||||| || || |||| |||| | ||||| ||| Sbjct 866 CAAAGATTAATCTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAAC 925 Query 26949 ATTCAAAAAGAATCTAC 26965 |||||||| || || || Sbjct 926 ATTCAAAAGGAGTCAAC 942 >seq4 Length=926804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || || || ||| | ||||| | || |||| | Sbjct 390502 ATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 390561 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | |||||| |||||| || |||||||| || || || |||||| Sbjct 390562 GATACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAA 390621 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || |||||||| ||||||| |||| || || || ||| Sbjct 390622 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 390681 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || | ||| |||| || | ||| | ||||| Sbjct 390682 ATCCAAAAGGAGTCAACCCTTCATTTGGTTCTTCGTCTTCGTGGAGG 390728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478634260634160