Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 156 1e-32 seq1 138 3e-27 seq21 113 1e-19 >seq5 Length=897882 Score = 156 bits (172), Expect = 1e-32 Identities = 411/622 (66%), Gaps = 14/622 (2%) Strand=Plus/Plus Query 111327 ACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGA 111386 ||||| || ||| | |||||| || ||||| ||||||||| ||||||||||| ||| Sbjct 895050 ACAACTAAAAAAACGTTTTGGAAAGGTATTGTTGAAGAACTTTTGTGGTTTATTTCGGGA 895109 Query 111387 AGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCA 111446 || || |||||||| ||| | || | ||| || |||||||||| ||||||| Sbjct 895110 AGCACTAATGCAAAAGAATTAAATGCCCGAGGTGTTAAGATTTGGGATGCAAATGGAAGT 895169 Query 111447 CGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 | | ||||| ||| | || || || | |||||||||| | ||||| ||| Sbjct 895170 AGACAGTTTCTTGATAGTCTAGGATTTACTGAAAGACCAGAAGGTGATTTGGGACCTGTT 895229 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTA----CAAAACCATGCACGACT-CAT 111561 || || || |||||| | || |||||||| | || | |||| |||| || Sbjct 895230 TATGGGTTCCAATGGAGACATTTTGGTGCTAAATATGAGGGAGTTGATGC-TGACTACAC 895288 Query 111562 ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAA 111621 | | | | ||| ||||||| || ||||| ||||| ||||| ||||||||||| Sbjct 895289 AGG----AAAAGGAGTTGATCAACTAGCAAATGTTATTGACCAAATAAAGAACAACCCTT 895344 Query 111622 CTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTC 111681 |||| | | ||||| | ||| ||||| ||| || | | |||||| | | Sbjct 895345 CTTCAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGGTGAAATGGTTTTGC 895404 Query 111682 CACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGT 111741 | ||||||||| | || |||||||| || || ||| | | || || ||| Sbjct 895405 CTCCATGTCATACACTAGTTCAATTTTATGTTCAAGATGGGGAGTTAAGTTGTCACTTGT 895464 Query 111742 ATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTAC 111801 |||| || | |||| ||||| | || ||||| ||||| ||||| ||| |||| Sbjct 895465 ATCAACGCAGCGGTGATGTTGGTTTGGGAGTTCCATTTAACATTGCTTCGTACTCACTTT 895524 Query 111802 TTACTTGCTTAATCGC--TCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTAT 111859 | ||| | || || |||| ||| ||| | ||||| || ||||| ||| Sbjct 895525 TGACTCATATGATTGCAAAAATTTGTGGAATAACAA--CTGGTGATTTTGTTCACACTAT 895582 Query 111860 CGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGTTGAAGCGCAA 111919 || ||||| ||| |||| | |||||| | |||||| || ||| ||| |||| || | Sbjct 895583 TGGCGATGCTCATATTTATAAAAACCATACTGATGCTCTGAAACAACAATTGACTCGAGA 895642 Query 111920 ACCATACGATTTCCCAACGATT 111941 ||| ||| || ||||| ||| Sbjct 895643 ACCCTACCCATTTCCAACAATT 895664 >seq1 Length=1686976 Score = 138 bits (152), Expect = 3e-27 Identities = 400/605 (66%), Gaps = 27/605 (4%) Strand=Plus/Minus Query 12604 TCAAGAACATTTTCAATTGTTGAATGTTCTTGAATTAATTGATATGCTCGAGTTGGGCCA 12663 |||| || | | ||||| || ||| || ||| || | ||||||| |||| ||| Sbjct 163445 TCAATAATAGTATCAATATTTTTATGAATTTTAATCAAATCATATGCTTTTTTTGGACCA 163386 Query 12664 ATTCCTTTAATTGTTTTAGTATAGTCACATCCAGAAAGAATGCAAATCTCAATAAATTGA 12723 ||||| ||||| || |||||| ||||||||| || |||||| ||||||||||| Sbjct 163385 ATTCCAACAATTGATTCAGTATAATCACATCCAAGAATTATGCAATAGTCAATAAATTGT 163326 Query 12724 TCCATTGTAATTCCCATGTCATTTAAAATATTTGGCAACGAGTATTCAACTGTTGGTT-- 12781 ||||| |||| ||||| || ||||| | ||| | ||| || | |||| | Sbjct 163325 TCCATCGTAAAGCCCATCTCTTTTAATACATTGTTTA-----GATTAAATTCTTGGATAG 163271 Query 12782 GCTTCTTTTGA----TCGGTGCTATTAATATGACGGATTA-CATATGTTGATCCAAATGT 12836 | | |||| | |||||| | ||| ||||| | | |||| | ||| || || Sbjct 163270 GAATTTTTTTACTTTCCGGTGCCAATAA-GTGACGAAGAAGTATAT-TACTTCCGAAAGT 163213 Query 12837 CAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTTTACAT-ATGCAG 12895 || | |||||| ||||| |||||||| ||| | |||| ||| || |||||| || | | Sbjct 163212 CAATGCATCCATATCTTCTGTTGCTGTAGCAAAAACTTTCCCT-TTCTTACATAATTCTG 163154 Query 12896 CACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCATTAGGGTTAGCA 12955 ||||| ||||| || ||||||||||| | ||| || | ||||| || | || | Sbjct 163153 CACATTGTGCTTCAGCTTCACATGGTGCATCAACATATGGGACACCCATAAGTGATAATA 163094 Query 12956 TCTTTTTTACTTCTTCGCTATGTTCGCGAGTTGCGCGAACGCTTCTCTTTTCTTGTTTTT 13015 |||||| ||| || | ||||| || | | || | ||||| || | |||| Sbjct 163093 ACTTTTTACATTCATCATTTTGTTCCTTTGTAACTCTAATAGTCCTCTTCTCATACTTTT 163034 Query 13016 CGACTTCAGTTGCATCGTCGGTTAATTTTAG-TTC------GGAT---AGTGCTTGTGCC 13065 | || | | || |||| | ||| ||||| ||| ||| |||| || Sbjct 163033 CAACACCGGCTGTATCG-CCTTTATCTTTAGCTTCTTTTAAAGATGCCTCAGCTTCAGCT 162975 Query 13066 TGTCGTTCATTTCGTTTATCAAGCTCTTTCTTTTTCAAAACAGGTGGCTTTCCGTCAAAA 13125 || ||| ||| |||| | || | ||| || | || || || ||||||||| Sbjct 162974 CTTCTCTCAGTTCTCTTATTCAATTCGTGTGATTTTAACTCTGGAGGTTTACCGTCAAAA 162915 Query 13126 ACATAGACGGGTTTAATTCCTGCTTCAATTAATCGAATGGTTCGGTAAAAAATACCTGTT 13185 || || || ||||| || || || || || | |||||| || |||||||||| ||| || Sbjct 162914 ACGTATACTGGTTTTATACCAGCCTCCATCATTCGAATCGTACGGTAAAAAAAACCATTT 162855 Query 13186 AAATG 13190 ||||| Sbjct 162854 AAATG 162850 >seq21 Length=323752 Score = 113 bits (124), Expect = 1e-19 Identities = 341/520 (66%), Gaps = 14/520 (3%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTT-CATTCGCGGAACG 22493 || || || |||||||| || | |||||| |||| |||| | | || | ||||| Sbjct 30754 AAGAAAGCTGATTGGGCTCTAAGATGGATTGCCGACAAA-AACGCTACTTTTGGAGAACG 30696 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 | | ||||| ||||| | |||||||| || ||||| ||||| ||||| ||| || || Sbjct 30695 TGTAATTGCTTTTGCAGCTGTTGAAGGAATATTCTTCTCTGGTTCATTTGCTGCCATATT 30636 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| || ||||||| | ||||| || |||| ||| |||||||| ||| ||| Sbjct 30635 CTGGCTTAAGAAACGTGGCTTGATGCCCGGGTTAACACATTCGAATGAGTTGATTTCCCG 30576 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAA 22673 ||||||||| | || |||||||| ||| | ||| | | | | | | || Sbjct 30575 AGATGAGGGGTTACACCGTGATTTTGCATGTCT--TAT----GTACAGTTACTTGGAGAA 30522 Query 22674 ACTTCCATATGA--AAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCT 22730 |||| ||| ||| | || || || |||| | |||| ||| ||||| Sbjct 30521 CAAGCCATCTGAAGAACGTATAAAGGAAATAATTAGAGATGCCGTTAGTATTGAAAAGGA 30462 Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTAC 22790 || | || || || | || || | | || || || ||| | | | |||| || Sbjct 30461 ATATCTTACTGATGCTCTTCCTGTTGATATGATCGGAATGAATTCAGGTTTAATGTGTGA 30402 Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAA 22850 ||||| | | |||||| |||| |||||| | ||| || | ||||| |||||| Sbjct 30401 TTATATCGAGTATGTTGCCGATCATCTATTGGTAGAACTTAATTGTCAAAAGCTTTATAA 30342 Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 || |||||||| | |||| | | ||| ||||||| || ||||||||||| Sbjct 30341 TACTAAGAACCCATTTGATTTTATGGTTAATCTCTCAATTGAAGGCAAAACCAATTTCTT 30282 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || | ||| ||||||||| ||| ||||| ||| Sbjct 30281 TGAGAAGAAAGTATCTGAATACCAGAAATTCGGTGTAATG 30242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303275063577746