Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq3059 105 6e-18 seq4 89.7 4e-13 >seq3059 Length=2231 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| | || |||||||||||||| | ||| || | | Sbjct 1202 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1261 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| || ||||| || ||| || ||| ||||| || || |||| ||||| Sbjct 1262 GACACTATT-GACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCA 1320 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| || |||||| | ||||||| | ||| | | ||||| || Sbjct 1321 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAA 1380 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| ||||| ||||| ||| | ||| |||| Sbjct 1381 CATCCAAAAGGAGTCAACTCTTCATTTGGT 1410 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| | || |||||||||||||| | ||| || | | Sbjct 1430 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1489 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| || ||||| || ||| || ||| ||||| || || |||| || || Sbjct 1490 GACACTATT-GACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGACCA 1548 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| || ||||| | || |||| | ||| | | ||||| || Sbjct 1549 ACAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAA 1608 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| ||||| ||||| ||| | ||| |||| Sbjct 1609 CATCCAAAAGGAGTCAACTCTTCATTTGGT 1638 >seq4 Length=926804 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 |||| |||||||||||||| || || | || || |||||||| || | || ||| Sbjct 390496 TTAACCATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAG 390555 Query 115340 TCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGT 115398 | || || ||| |||| || ||| || ||| ||||||||||| |||| Sbjct 390556 CCTTCTGATACAATTG-ACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACC 390614 Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||||| |||||| | |||| ||| || |||||| | ||||||| | ||| | | || Sbjct 390615 AGATCAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGA 390674 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| ||||| ||||| ||||| || | ||| |||| Sbjct 390675 TTACAACATCCAAAAGGAGTCAACCCTTCATTTGGT 390710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425319620212360