Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3059 116 2e-21 seq4548 102 5e-17 seq4 96.9 2e-15 seq316 86.0 4e-12 seq2 82.4 5e-11 >seq3059 Length=2231 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| ||||||||| || ||||||||||| | | | | | || || Sbjct 1410 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 1351 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| ||||| |||| | ||||||||| | |||| || || || || | Sbjct 1350 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGA 1291 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || ||||| | | ||| || | ||| ||||| | ||||| ||||| Sbjct 1290 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTT 1231 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| ||||| ||||| |||||||| Sbjct 1230 CCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| ||||||||||||||| ||||| || | | | | | || || Sbjct 1182 ACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCTTCA 1123 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| ||||| || | | |||||| || | |||| ||||| ||||| | Sbjct 1122 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGA 1063 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | || || || | ||| || || | ||||| || || Sbjct 1062 ATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTCTTT 1003 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || ||||| |||||||| Sbjct 1002 CCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| ||||||||| || ||||||||||| | | | | | || || Sbjct 1638 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 1579 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| ||||| || | | |||||| || | |||| || || || || | Sbjct 1578 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTGA 1519 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || ||||| | | ||| || | ||| ||||| | ||||| ||||| Sbjct 1518 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTT 1459 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| ||||| ||||| |||||||| Sbjct 1458 CCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||||||||| || ||||||||||| | | | | | || || Sbjct 270 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 211 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| ||||| |||| | |||||| || | || | ||||||||||| | Sbjct 210 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGA 151 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || ||||| | | ||| || | ||| || || | ||||| || || Sbjct 150 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGTAATGGTCTTT 91 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || ||||| |||||||| Sbjct 90 CCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || |||||||| || |||||||||||| ||||| ||||| | | | | | || || Sbjct 954 ACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCA 895 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| ||||| |||| | |||||| || | || | ||||||||||| Sbjct 894 AGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 835 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| || || | | || || | ||| || || | ||||||||||| Sbjct 834 ATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 775 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| || || || |||||||| Sbjct 774 CCAGTCAAGGTCTTAACAAAGATCTGCAT 746 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||| || || || ||||| ||||| | | | | | || || Sbjct 498 ACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCA 439 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||| ||||| ||||| |||| | ||||||||| | |||| || || || || | Sbjct 438 AGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGA 379 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || ||||| | | || || | ||| || || | ||||||||||| Sbjct 378 ATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 319 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| || || ||||| ||||| Sbjct 318 CCAGTCAAGGTCTTGACAAATATTTGCAT 290 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||| || || || ||||| ||||| | | | | | || || Sbjct 726 ACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCA 667 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| ||||| || | | |||||| || | || | ||||||||||| Sbjct 666 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 607 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| || || | | || || | ||| || || | ||||||||||| Sbjct 606 ATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 547 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| || || || |||||||| Sbjct 546 CCAGTCAAGGTCTTAACAAAGATCTGCAT 518 >seq4548 Length=666 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| ||||||||| || ||||||||||| | | | | | || || Sbjct 665 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 606 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| ||||| || | | |||||| || | || | ||||||||||| Sbjct 605 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 546 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| || || | | || || | ||| || || | ||||||||||| Sbjct 545 ATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 486 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| || || || |||||||| Sbjct 485 CCAGTCAAGGTCTTAACAAAGATCTGCAT 457 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || ||||| ||||||||||| ||||| ||||| | | | | | || || Sbjct 209 ACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCG 150 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| || || || | | |||||| || | || | ||||||||||| | Sbjct 149 AGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGA 90 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| || || | | ||||| | ||| ||||| | || || || || Sbjct 89 ATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTTT 30 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| || || |||||||| Sbjct 29 CCAGTTAAAGTTTTAACAAAGATCTGCAT 1 >seq4 Length=926804 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||||||||| || ||||||||||| | | | | | || || Sbjct 390710 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 390651 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| ||||| |||| | ||||||||| | |||| |||||||| || | Sbjct 390650 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGA 390591 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || ||||| | | ||||| | || || || | || || ||||| Sbjct 390590 ATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 390531 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| || || || || || |||||| || Sbjct 390530 CCTGTCAAAGTCTTAACAAAAATTTGCATGGTT 390498 >seq316 Length=33296 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| || |||||||||| | |||||||| Sbjct 16658 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGT 16599 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||| |||||||| ||||| ||||| Sbjct 16598 TAATCCATTCGTGCGCGTCGGAAATTACCCGACGA 16564 >seq2 Length=1316228 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG-CGCATCTGCGC 6232 || || ||||||||||| | ||| | | |||||| ||||| |||||| || || || Sbjct 1276040 AATGTCAATCGTAATGTAGTGGATCCATACTACCGTTACAAGATGCCGAAGCTTC-AAGC 1275982 Query 6233 CAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGC 6292 || || || ||||| || || || || || || ||||| | || ||| |||| | || Sbjct 1275981 AAAAGTTGAAGGTAAAGGTAATGGGATCAAGACAGTCATAGCTAATATGGTTGAAATTGC 1275922 Query 6293 TAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGC 6352 |||||| || | | || | | || || || || ||||| || || ||| | || || Sbjct 1275921 TAAGGCTCTAGAGAGACCGCCAATGTATCCAACAAAGTATTTTGGTTGTGAATTAGGAGC 1275862 Query 6353 TCAGACGCAGTTTGATCACAAA-AACGAGCGCTTCATCGTTAACGG 6397 ||| || | |||||| ||||| || || || | ||| || || || Sbjct 1275861 TCAAACCAATTTTGAT-ACAAAGAATGACCGTTACATTGTCAATGG 1275817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334928001559193