Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq21 260 2e-64 >seq21 Length=323752 Score = 260 bits (288), Expect = 2e-64 Identities = 540/794 (68%), Gaps = 25/794 (3%) Strand=Plus/Plus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATTGTCAA-----GTGGATTCTTATTCATAAC 92795 |||||||||| || |||| |||||| ||| || ||||| ||| || Sbjct 30196 ATTAGAAATCAGCGTCTAATGTAAAAACACGTTCCTCCTCTGTGGA--------CATTAC 30247 Query 92796 ACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAA--A 92853 ||| |||| |||||||| ||||| || ||||||||||| || || ||||| | | Sbjct 30248 ACCGAATTTCTGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTCAATTGA 30307 Query 92854 GATATCGAATTCACTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTC 92913 || || | | | | ||| ||||| | |||||| ||||| || || || | Sbjct 30308 GAGATTAACCATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACA-ATTAAGTT 30366 Query 92914 GTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTC 92972 ||| |||| ||| || ||| | || || || | | |||| ||| | ||||||||| Sbjct 30367 CTACCAATAGATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATTC 30426 Query 92973 CTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAAT-CTTTCTCGATTACAACGGCTTCT 93031 | | | | ||||| ||||| || || |||| || | || || || |||||| ||| Sbjct 30427 CGATCATATCAACAGGAAGAGCATCAGT-AAGATATTCCTTTTCAATACTAACGGCATCT 30485 Query 93032 TTCAAGATTTCTATTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAA 93090 | | ||||| ||| | | || | | ||| || | | | ||| ||||||| | Sbjct 30486 CTAATTATTTCCTTTATACGTTCT-TCAGATGGCTTGTTCTCCAAGTAACTGTACATAAG 30544 Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA--TGTT 93148 || ||||| || ||||| || || ||||| || ||||||||||| ||| |||| Sbjct 30545 ACATGCAAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATT--CGAATGTGTT 30602 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 || || || | || || |||||||| ||||| ||||| | |||||| |||||| || Sbjct 30603 AACCCGGGCATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAG 30662 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 ||||| ||||| || |||||||| || | | |||||| ||||| | ||| || | Sbjct 30663 AATATTCCTTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTCG 30722 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 |||||| ||| ||||||||| ||||| || | || |||| | | || | |||| Sbjct 30723 GCAATCCATCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCG 30782 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 || || || | || || ||| ||| ||| || ||||| || || || | || ||| Sbjct 30783 TTGAAGAGTTTATTTCTCTCATCCTGATCACGAATGTAGGTTTCAATAAGTTTCGAGTAC 30842 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 || ||| ||| | ||| ||||| |||||||| || || |||||| | | || || | | Sbjct 30843 ATCTCACTATGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTCGGGG 30902 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | ||| ||||| | |||||||| || || | ||| || || || |||||||| ||||| Sbjct 30903 ACCTGGACTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATCCGATGCA 30962 Query 93509 GCaaaaaaaGCCAA 93522 ||||| || || || Sbjct 30963 GCAAAGAAGGCTAA 30976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556828063545720