Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq3059 98.7 8e-16 seq4 93.3 4e-14 >seq3059 Length=2231 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| |||||||| |||| || ||||||||||| | ||| ||||| | Sbjct 1202 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1261 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 || || ||| | | || ||| || ||| || ||| ||| | |||| | ||||| Sbjct 1262 GACACTATTGACAATGTCAAATCCAAGATTCAAGA-TAAGGAGGGGATCCCACCAGATCA 1320 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| | |||| ||| || |||||| | |||||| | |||| | | ||||| || Sbjct 1321 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAA 1380 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || ||||| || | ||||| || || || Sbjct 1381 CATCCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTCCGTGGAGG 1428 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || ||||| || | || || || |||||||| | || ||||| | Sbjct 62 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCC 121 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | | || ||| || ||| ||||||||||| |||| || ||| Sbjct 122 GACACTATTGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 181 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| ||| || |||||| | |||||| | |||| | | ||||| || Sbjct 182 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 241 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || ||||| || | ||||| || || || Sbjct 242 ATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCCGTCTCCGTGGAGG 288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| |||||||| |||| || ||||||||||| | ||| ||||| | Sbjct 1430 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1489 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 || || ||| | | || ||| || ||| || ||| ||| | |||| | || || Sbjct 1490 GACACTATTGACAATGTCAAATCCAAGATTCAAGA-TAAGGAGGGGATCCCACCAGACCA 1548 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| | |||| ||| || ||||| | || ||| | |||| | | ||||| || Sbjct 1549 ACAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAA 1608 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || ||||| || | ||||| || || || Sbjct 1609 CATCCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGG 1656 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCAACAAAGGCTTATTTATGCGGGCAA 111329 |||||| ||||| ||||| | |||| | || |||||||| | |||| ||| || || Sbjct 1058 AAAATTCAAGACAAGGAAGG-GATCCCACCAGACCAACAAAGATTGATTTTTGCTGGAAA 1116 Query 111330 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 |||| | |||||| | |||| | ||||||||||||| ||||| || || || || || Sbjct 1117 ACAACTTGAAGATGGAAGAACTCTTTCCGATTATAATATTCAAAAGGAGTCAACTCTTCA 1176 Query 111390 TTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || | ||||| || || || Sbjct 1177 TTTGGTTCTTCGTCTCCGTGGAGG 1200 >seq4 Length=926804 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 ||||| |||||||||||||| || || |||| ||||||||||| || | || || Sbjct 390495 TTTAACCATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGA 390554 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 || ||| | ||| | | || ||| || ||| || |||||||| | || Sbjct 390555 GCCTTCTGATACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACC 390614 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111359 ||||||||||| | |||| ||| || |||||| | |||||| | |||| | | || Sbjct 390615 AGATCAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGA 390674 Query 111360 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || ||||| || || || || ||||| || | ||||| || || || Sbjct 390675 TTACAACATCCAAAAGGAGTCAACCCTTCATTTGGTTCTTCGTCTTCGTGGAGG 390728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423015752272600