Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3059 149 5e-31 seq4 143 2e-29 seq4548 141 8e-29 seq38 113 4e-20 seq5 109 5e-19 seq1 87.8 2e-12 >seq3059 Length=2231 Score = 149 bits (164), Expect = 5e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || || ||||| | ||||||||||| ||| | || Sbjct 1430 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1489 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || |||||||| |||||||| || ||||| || ||| Sbjct 1490 GACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAA 1549 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || |||||| | |||||| | || |||| ||||||||| Sbjct 1550 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAAC 1609 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTC 22450 || ||||| || || || | ||||| ||| | || | || ||||||| || Sbjct 1610 ATCCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGGTTCTC 1661 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || || ||||| | ||||||||||| ||| | || Sbjct 1202 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1261 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || |||||||| |||||||| || ||||| |||||| Sbjct 1262 GACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAA 1321 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| | || ||| | || |||| ||||||||| Sbjct 1322 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 1381 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | ||||| ||| | || | || |||||| Sbjct 1382 ATCCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTCCGTGGAGGT 1429 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || || || || ||||| | ||||| || || ||| | | Sbjct 746 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 805 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || ||| || |||||||| || ||||||||||| || ||| Sbjct 806 GACACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 865 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || |||||| | |||||| | || | || || |||||| Sbjct 866 CAAAGATTAATCTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAAC 925 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||| | ||||||||| | || | || |||||| Sbjct 926 ATTCAAAAGGAGTCAACCCTTCATTTAGTTCTCCGTCTCCGTGGAGGT 973 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || |||||||| || || || | |||||||| || ||| | || Sbjct 62 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCC 121 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || ||||||||||| || || |||||||| || ||| Sbjct 122 GACACTATTGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 181 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| | || ||| | || |||| ||||||||| Sbjct 182 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 241 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | ||||| || | || | || |||||| Sbjct 242 ATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCCGTCTCCGTGGAGGT 289 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || || || || ||||| | ||||| || || ||| | | Sbjct 518 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 577 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || ||| || |||||||| || ||||||||||| || ||| Sbjct 578 GACACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 637 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || |||||| | |||||| | || | || || |||||| Sbjct 638 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAAC 697 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || ||| | ||||| || | || | || |||||| Sbjct 698 ATCCAGAAAGAGTCAACCCTTCATTTGGTCCTCCGTCTCCGTGGAGGT 745 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || |||||||| || || || | |||||||| || ||| | | Sbjct 974 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCT 1033 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||||||||||||||| || || ||||| || ||| Sbjct 1034 GACACCATCGATAATGTCAAGTCGAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAA 1093 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| | || ||| | || | |||||||| || Sbjct 1094 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCCGATTATAAT 1153 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || | ||||| ||| | || | || |||||| Sbjct 1154 ATTCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTCCGTGGAGGT 1201 >seq4 Length=926804 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||||| || || ||||| |||||||||| || || | | Sbjct 390502 ATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 390561 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || ||||| || |||||||| || || || || ||||| |||||| Sbjct 390562 GATACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAA 390621 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| | || ||| | || |||| ||||||||| Sbjct 390622 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 390681 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTC 22450 || ||||| || || ||| | ||||| ||| | || | || ||||||| || Sbjct 390682 ATCCAAAAGGAGTCAACCCTTCATTTGGTTCTTCGTCTTCGTGGAGGTTCTC 390733 >seq4548 Length=666 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||||||||| || || || ||||||||||||||||| | | Sbjct 1 ATGCAGATCTTTGTTAAAACTTTAACTGGAAAGACCATCACTCTTGAAGTGGAACCTTCT 60 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||| ||||||||||| || || |||||||| || ||| Sbjct 61 GATACCATTGATAACGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 120 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| | |||||| | || | || || |||||| Sbjct 121 CAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAAC 180 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| || | || || ||| | || | || |||||| Sbjct 181 ATTCAAAAGGAATCAACTCTCCACTTGGTTCTCCGTCTTCGTGGAGGT 228 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || || || || ||||| | ||||| || || ||| | | Sbjct 457 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 516 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || ||| || |||||||| || ||||||||||| || ||| Sbjct 517 GACACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 576 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || |||||| | |||||| | || |||| ||||||||| Sbjct 577 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAAC 636 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || || | ||||| || Sbjct 637 ATCCAAAAGGAGTCAACTCTTCATTTGGT 665 >seq38 Length=203164 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | || ||||| || ||||||||||||| || | | Sbjct 170840 ATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCATCA 170899 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||||| |||||||| || || || ||||| || ||| Sbjct 170900 GATACCATCGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCAGACCAA 170959 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||||||||| |||||||| Sbjct 170960 CAACGTCTTATTTTTGCCGG 170979 >seq5 Length=897882 Score = 109 bits (120), Expect = 5e-19 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 22192 GAGATATAGTTTTATACATTTGTAAAGAT--GCAAATTTTTGTTAAAACTTTAACCGGTA 22249 || ||||| ||||||| || ||||| ||||||||| || ||||||||||| || | Sbjct 723769 GAAATATATTTTTATATGTTATAGAAGATATGCAAATTTTCGTAAAAACTTTAACTGGAA 723828 Query 22250 AAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTC 22309 |||| | |||||||| || || || ||||||| || || || | || || || | Sbjct 723829 AAACAATAACTCTTGAGGTTGAGGCCTCCGATACTGTTGATAATGTTAAGACTAAGATCC 723888 Query 22310 AAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 | || || || ||||||||||| || || ||||| ||||| |||||||| Sbjct 723889 ATGAAAAAGAAGGTATTCCACCAGACCAGCAACGGCTTATTTTTGCCGG 723937 >seq1 Length=1686976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 130014 TTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCT-T 130072 ||| || ||||||||||| ||||| || ||||| || |||| || ||||| || ||| | Sbjct 915843 TTCAACACGTTTCATAAATAAATCTGGAACCCAAAGTCCGTAAAATAAATCGCGTGCTCT 915902 Query 130073 TTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCC 130132 |||| || || | || |||| ||| | ||||| || | | ||| || || |||| Sbjct 915903 TTCT-TCTTCTGGTCCTGTGTTCTTTTTTAACTCAAGAAATTGGATAATATCTGCATGCC 915961 Query 130133 ACGGTTCAACATAAATTGCCATTGCGCCCTTCCGT---TTGCCCCCTTGGTCAACGTGGC 130189 | ||||| | ||| || || | ||| || | | ||||| ||||| ||||| | | Sbjct 915962 ATGGTTCCAAATATATAGCAAATGCACCAGGTCTTTTATTGCCACCTTGATCAACATAAC 916021 Query 130190 GCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTT 130232 | || | | | ||||| || || ||||||| |||| || || Sbjct 916022 GAACAGTACTATTGTAAACACGTAACATTGGAACCAAACCATT 916064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419703942109195