Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3059 176 8e-39 seq4548 170 4e-37 seq4 143 5e-29 seq973 86.0 1e-11 seq745 86.0 1e-11 seq43 86.0 1e-11 seq7 86.0 1e-11 seq6 86.0 1e-11 seq3 86.0 1e-11 >seq3059 Length=2231 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||||| || || || ||||| ||||| || ||||||||||| Sbjct 1200 CCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAA 1141 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || || || || | |||||||||||| ||||| Sbjct 1140 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 1081 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||||||||| || | |||||| ||||||||||| | | |||||| Sbjct 1080 ATCCCTTCCTTGTCTTGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACC 1021 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| ||||| || | ||||||||||| |||||||| Sbjct 1020 TCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||||| || || || ||||| ||||||||||| ||||| ||| Sbjct 288 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 229 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || || || || | |||||||||||| |||||| Sbjct 228 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 169 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| | ||||| || || ||||| | | |||||| Sbjct 168 ATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACC 109 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| ||||| || | ||||||||||| |||||||| Sbjct 108 TCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || ||||| ||||||||||| ||||| ||| Sbjct 1656 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAG 1597 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || | ||| || || || || || | |||||||||||| ||||| Sbjct 1596 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 1537 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| | ||||| || || ||||| | | ||||||| Sbjct 1536 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACT 1477 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||||||||| || | || |||||||| |||||||| Sbjct 1476 TCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||||| || || || |||||||| |||||||| || || || Sbjct 744 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 685 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || | ||| || || || || || | |||||||||||| |||||| Sbjct 684 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 625 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| ||||||| ||| ||| || |||||||| | | |||||| Sbjct 624 ATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACC 565 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || |||||||| || | |||||| || || |||||||| Sbjct 564 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 518 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||||| || || || |||||||| |||||||| || || ||| Sbjct 516 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAG 457 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | ||||| || || || || | ||||||||| || ||||| Sbjct 456 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGG 397 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| | ||||| || |||||||| | | |||||| Sbjct 396 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTACC 337 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || |||||||| || | ||||||||| ||||| ||||| Sbjct 336 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||||| || || || ||||| ||||||||||| ||||| ||| Sbjct 1428 CCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAG 1369 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || || || || | ||||||||| || ||||| Sbjct 1368 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGG 1309 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| | ||||| || || ||||| | | ||||||| Sbjct 1308 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACT 1249 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||||||||| || | || |||||||| |||||||| Sbjct 1248 TCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || || || || || ||||| ||||| ||||| || || || Sbjct 972 CCTCCACGGAGACGGAGAACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAA 913 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || | ||| || || || || || | |||||||||||| |||||| Sbjct 912 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGA 853 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| ||||||| ||| ||| || |||||||| | | |||||| Sbjct 852 ATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACC 793 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || |||||||| || | |||||| || || |||||||| Sbjct 792 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 746 >seq4548 Length=666 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || || ||||| ||||||||||| ||||| ||||| || || ||||| || Sbjct 665 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 606 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || | |||||||||||| |||||||| ||||| |||||||| Sbjct 605 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 546 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||||| ||| ||| || |||||||| | | |||||| || | || || |||||| Sbjct 545 ATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 486 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| || || |||||||| Sbjct 485 CCAGTCAAGGTCTTAACAAAGATCTGCAT 457 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | |||||||| || || || || ||||| ||||| || || || Sbjct 227 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAA 168 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || | || || || ||||| || | |||||||||||| |||||| Sbjct 167 AGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGA 108 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||||| ||||||| || ||||| || | | ||| ||| Sbjct 107 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCACT 48 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || | || || || || |||||||| Sbjct 47 TCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||||||| || || |||||||| |||||||| || || || Sbjct 455 CCTCCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 396 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || | || || || ||||| || | |||||||||||| ||||| Sbjct 395 AGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGG 336 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || |||||||| ||||||| ||| ||| || |||||||| | | ||||| Sbjct 335 ATTCCCTCTTTGTCTTGGATCTTTGACTTAACGTTATCAATGGTGTCAGAAGGCTCTACC 276 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| |||||||| || | |||||| || || || ||||| Sbjct 275 TCAAGAGTGATAGTTTTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 229 >seq4 Length=926804 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || || || ||||| ||||||||||| ||||| ||| Sbjct 390728 CCTCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 390669 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || || || || | ||||||||| || ||||| Sbjct 390668 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGG 390609 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || ||||||||||| | ||||| || || || || | | ||||| Sbjct 390608 ATTCCTTCTTTATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACC 390549 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || || | ||||| || || || ||||| Sbjct 390548 TCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq973 Length=7184 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 1421 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1480 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 1481 CCCGCATCGGGC 1492 >seq745 Length=9391 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 8213 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 8154 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 8153 CCCGCATCGGGC 8142 >seq43 Length=190421 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 118180 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 118239 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 118240 CCCGCATCGGGC 118251 >seq7 Length=725563 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 519841 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 519900 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 519901 CCCGCATCGGGC 519912 >seq6 Length=886501 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 67239 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 67298 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 67299 CCCGCATCGGGC 67310 >seq3 Length=1139157 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 197025 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 196966 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 196965 CCCGCATCGGGC 196954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921568220123160