Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 >seq5 Length=897882 Score = 113 bits (124), Expect = 4e-20 Identities = 269/404 (67%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 20181 TATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGAC 20240 |||| |||| || || || ||||| || | ||||||| ||| || || | | | | | Sbjct 895611 TATGGTTTTTATAAATATGAGCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTATTC 895552 Query 20241 CAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTC 20300 || || | |||| ||||| ||| || || || || ||||||||||| ||||||| Sbjct 895551 CACAAATTTTTGCAATCATATGAGTCAAAAGTGAGTACGAAGCAATGTTAAATGGAACTC 895492 Query 20301 CCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACAT 20360 ||||||| | || || | ||||||| ||||| | ||| || || |||| Sbjct 895491 CCAAACCAACATCACCGCTGCGTTGATACAAGTGACAACTTAACTCCCCATCTTGAACAT 895432 Query 20361 AAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTC 20419 |||||||| || ||||| || || | |||| | |||| || | || ||| Sbjct 895431 AAAATTGAACTAGTGTATGACATGGAGGCAAAACCAT-TTCACCAAGATCAGATGGATTC 895373 Query 20420 CACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTAC 20479 || ||| | | || |||||||| || || || |||||| || | || | Sbjct 895372 CAAGCAGATAAGATAATTCTTCTTGAAGAAGGGTTGTTCTTTATTTGGTCAATAACATTT 895313 Query 20480 GACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCA 20539 | | ||| |||| || | ||||| ||||||||||| | || | || || ||| Sbjct 895312 GCTAGTTGATCAACTCCTTTTCCTGTGTAGTCAGCATCAACTCCCTCATATTTAGCACCA 895253 Query 20540 AAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 || || ||||| ||||| || ||||||||||||||||| || || Sbjct 895252 AAATGTCTCCATTGGAACCCATAAACAGGTCCCAAATCACCTTC 895209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441346852796520