Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq21 179 9e-40 seq3059 113 1e-19 seq4 104 6e-17 seq38 98.7 2e-15 seq4548 95.1 3e-14 >seq21 Length=323752 Score = 179 bits (198), Expect = 9e-40 Identities = 276/390 (71%), Gaps = 4/390 (1%) Strand=Plus/Plus Query 72409 GAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGG 72468 || ||| |||||| ||| | ||||| | ||||||||||| |||||||| || || | | Sbjct 162437 GATTTTACCAAGCTTCTACCTCAGAACTTTATGGAAAAGTCCAAGAAATCCCCCAAAAAG 162496 Query 72469 AAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGA 72528 | | || || |||||||| ||||| || || | || ||||| |||||||||||||||| Sbjct 162497 AGACAACACCATTTTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCTTATTGGA 162556 Query 72529 TCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATC 72588 | ||||||||| ||||| | ||| || | || ||||| |||| || |||| Sbjct 162557 TAATTAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTTAATC 162616 Query 72589 ACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGA 72648 | || || | ||||| || | || || || | ||||| || | || || || | Sbjct 162617 ATGAATCACCAAGAAGAGGTAATAACTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTA 162676 Query 72649 ATATTTTCAATGGTGTCGAAAAATGCATGTAT--CTCGGTAATATAGATGCCAAAAGAGA 72706 | ||| | ||||| || || ||| ||| || |||||| | ||||| ||| | || Sbjct 162677 AAATTAGTATAGGTGTTCAAGAA-ACAT-TATTACTTGGTAATTTGGATGCTAAACGTGA 162734 Query 72707 TTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCC 72766 |||||| |||| || || || || ||||| |||||| || || ||||| ||| || Sbjct 162735 TTGGGGTCATGCAAAAGAGTATGTTGAAGCTATGTGGAGAATTCTTCAACACGATGAACC 162794 Query 72767 GGATGACTATGTGATTGCAACAGGGAAAAC 72796 ||||||| ||| ||||| ||||| ||||| Sbjct 162795 AGATGACTTTGTTATTGCTACAGGTAAAAC 162824 >seq3059 Length=2231 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | ||||| || || ||||| |||||||| |||| Sbjct 1200 CCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAA 1141 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | ||||||||| || || |||| | ||||| |||| Sbjct 1140 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 1081 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || ||||||| || || || || || | || | |||||| Sbjct 1080 ATCCCTTCCTTGTCTTGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACC 1021 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || | |||||||||||| |||||||| Sbjct 1020 TCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || | ||||| || || |||||||| || || || | | Sbjct 288 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 229 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | ||||||||| || || || | | ||||| ||| Sbjct 228 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 169 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| || || || || | ||| || || || |||| ||| | |||||| Sbjct 168 ATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACC 109 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || | |||||||||||| |||||||| Sbjct 108 TCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 >seq4 Length=926804 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || | ||||| || || |||||||| || || || | | Sbjct 390728 CCTCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 390669 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | ||||||||| || || || | | |||||| |||| Sbjct 390668 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGG 390609 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| || || || | ||| || || || || | ||| | ||||| Sbjct 390608 ATTCCTTCTTTATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACC 390549 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| |||||| || || || ||||| Sbjct 390548 TCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq38 Length=203164 Score = 98.7 bits (108), Expect = 2e-15 Identities = 124/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || ||||| ||||| ||||||||||||||| || |||||||| ||| Sbjct 170979 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCT 170920 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | ||| | || ||||| || ||||| ||||| || || ||| Sbjct 170919 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 170860 Query 288454 GTCTTGACGAATATCTGCATTATGTTATTCTAATATTTTTAATAATGTA 288502 ||||| ||||| || ||||| || ||||| | ||||||||| || Sbjct 170859 GTCTTAACGAAAATTTGCAT----TTCGTCTAAAA--TTTAATAATATA 170817 >seq4548 Length=666 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||| | || || | ||| || || | ||||||||| ||||| Sbjct 192 TTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAA 133 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||||| ||| ||||||||||| || || || || | || ||||| Sbjct 132 AATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTT 73 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | ||| ||||| || ||||| ||||| || || | ||| || || Sbjct 72 ATCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAAC 13 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 12 AAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179583317343634