Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq21 179 8e-40 >seq21 Length=323752 Score = 179 bits (198), Expect = 8e-40 Identities = 276/390 (71%), Gaps = 4/390 (1%) Strand=Plus/Plus Query 68398 GAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGG 68457 || ||| |||||| ||| | ||||| | ||||||||||| |||||||| || || | | Sbjct 162437 GATTTTACCAAGCTTCTACCTCAGAACTTTATGGAAAAGTCCAAGAAATCCCCCAAAAAG 162496 Query 68458 AAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGA 68517 | | || || |||||||| ||||| || || | || ||||| |||||||||||||||| Sbjct 162497 AGACAACACCATTTTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCTTATTGGA 162556 Query 68518 TCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATC 68577 | ||||||||| ||||| | ||| || | || ||||| |||| || |||| Sbjct 162557 TAATTAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTTAATC 162616 Query 68578 ACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGA 68637 | || || | ||||| || | || || || | ||||| || | || || || | Sbjct 162617 ATGAATCACCAAGAAGAGGTAATAACTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTA 162676 Query 68638 ATATTTTCAATGGTGTCGAAAAATGCATGTAT--CTCGGTAATATAGATGCCAAAAGAGA 68695 | ||| | ||||| || || ||| ||| || |||||| | ||||| ||| | || Sbjct 162677 AAATTAGTATAGGTGTTCAAGAA-ACAT-TATTACTTGGTAATTTGGATGCTAAACGTGA 162734 Query 68696 TTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCC 68755 |||||| |||| || || || || ||||| |||||| || || ||||| ||| || Sbjct 162735 TTGGGGTCATGCAAAAGAGTATGTTGAAGCTATGTGGAGAATTCTTCAACACGATGAACC 162794 Query 68756 GGATGACTATGTGATTGCAACAGGGAAAAC 68785 ||||||| ||| ||||| ||||| ||||| Sbjct 162795 AGATGACTTTGTTATTGCTACAGGTAAAAC 162824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102813543553050