Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq4 105 7e-18 seq4548 95.1 1e-14 seq1 93.3 4e-14 seq3059 89.7 5e-13 seq38 86.0 6e-12 >seq5 Length=897882 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| |||| ||||| |||||||| || ||||| ||||||||||| || || || | Sbjct 723937 CCGGCAAAAATAAGCCGTTGCTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAGTC 723878 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| || || ||||| ||| || || || | ||||| || || || || ||| Sbjct 723877 TTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 723818 Query 64424 GTTTTTACGAAAATTTGCAT 64443 |||||||||||||||||||| Sbjct 723817 GTTTTTACGAAAATTTGCAT 723798 >seq4 Length=926804 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || ||||| ||||||||||| | || || | | || Sbjct 390714 AAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATC 390655 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || || || ||| |||| | | || || || || || ||||||||||| || Sbjct 390654 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATC 390595 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || || ||| || | ||||||| | || || || | ||| | ||| Sbjct 390594 TTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGT 390535 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||||||| || || ||||||||||| Sbjct 390534 TTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq4548 Length=666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||||||||| || | | || | | || || || || || || Sbjct 197 GTTGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCGAGTTGTTTTCCA 138 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | | || ||||| || |||||||||||||| ||||| || ||| ||| Sbjct 137 GCGAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTTGACTTG 78 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | |||||||| | ||| | |||||| || || |||||| Sbjct 77 ACGTTATCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTTTCCAGTTAAAGTT 18 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 17 TTAACAAAGATCTGCAT 1 >seq1 Length=1686976 Score = 93.3 bits (102), Expect = 4e-14 Identities = 346/531 (65%), Gaps = 15/531 (3%) Strand=Plus/Plus Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645 |||| |||| || ||||| |||| ||| | || | |||| |||||||| || || Sbjct 915528 AGACCCCAAATTACAAACAGCAACTTCATTAGGGGAAGAAAATTGAACAATTTCAGCACA 915587 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 | ||| ||| || || || | |||| ||||| ||| ||| || || Sbjct 915588 AAGATTTGAACATTTTATTGTTCCTAAATTTTGTTGATTACTTTTACGGTTACAATGATC 915647 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAAT--TGTGCGAAAC 154763 ||||| | || || || | ||||| || | || | |||| ||| | ||| ||| Sbjct 915648 CTTGTAAAGCATATATGGAATACCCGTCTCTATCTGAGATTCACAAATCTTCTGCCAAAT 915707 Query 154764 AGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGT 154823 | | || || | ||||| || | |||||||| | ||||||||| |||| ||| Sbjct 915708 ATA--TCTGGCTTTTACTTGTTTCCTATAACGATTTTCATTTTCATATTGTACGTAAAGT 915765 Query 154824 TTTTCAAACTCTAAACTGTACACGTCCGACAA-ACCGGGACAGCGGTCGGGACACATCAA 154882 || ||||| || || | || | ||| ||| ||||| | |||||||| || Sbjct 915766 TTATCAAAATCATCACCAAA-ACAATCATCAAGACCCGGACATTCATTAGGACACATTAA 915824 Query 154883 TGACCACATTTCGTTTTGTTGT--ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCG 154940 ||||| || | | | | | | || ||||||||||| ||||| || ||||| | || Sbjct 915825 CGACCA-ATGT-GAATCGCTTTCAACACGTTTCATAAATAAATCTGGAACCCAAAGTCCG 915882 Query 154941 TACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAA 155000 || || ||||| || || ||| ||||| | || || ||| ||| || |||| ||| Sbjct 915883 TAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTCCTGTG-TTCTTTTTTAACTCAAGAAA 915941 Query 155001 TCATAT-ATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC---TTTGCGTTT 155056 | || || || || ||||| || || ||||||| || | || || | | || Sbjct 915942 TTGGATAATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCACCAGGTCTTTTATT 916001 Query 155057 TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGG 155107 || |||||||| || | ||| ||| | ||||||| || || |||| ||| Sbjct 916002 GCCACCTTGATCAACATAACGAACAGTACTATTGTAAACACGTAACATTGG 916052 >seq3059 Length=2231 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || ||||| ||||||||||| | || || | | ||| Sbjct 273 AGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCT 214 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || || ||| |||| | | || ||||| || |||||||||||||| ||| Sbjct 213 TCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCT 154 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || || ||| || | || || | || || || | ||| | |||| Sbjct 153 TGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGTAATGGTC 94 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| || ||||| || ||||| Sbjct 93 TTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || ||||| ||||||||||| | || || | | || Sbjct 1642 AAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATC 1583 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||| || || ||| |||| | | || ||||| || || || || || || || Sbjct 1582 CTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATC 1523 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || || ||| || | || || | || ||||| | ||| | ||| Sbjct 1522 TTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGT 1463 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||||||||| |||||||| ||||| Sbjct 1462 TTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || ||||| ||||||||||| | || || | | || Sbjct 1414 AAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATC 1355 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || || || ||| |||| | | || || || || || || || || || || Sbjct 1354 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATC 1295 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || || ||| || | || || | || ||||| | ||| | ||| Sbjct 1294 TTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGT 1235 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||||||||| |||||||| ||||| Sbjct 1234 TTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 >seq38 Length=203164 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| |||| || || || ||||| || || ||||||||||| ||||| ||||| Sbjct 170979 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCT 170920 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| || | ||||| | || ||||| | ||| | ||||| || || | | Sbjct 170919 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 170860 Query 64424 GTTTTTACGAAAATTTGCATTT 64445 || || |||||||||||||||| Sbjct 170859 GTCTTAACGAAAATTTGCATTT 170838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499615427131320