Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3059 131 1e-25 seq4 127 1e-24 seq4548 95.1 9e-15 >seq3059 Length=2231 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || ||||| ||||||||||| |||| |||| | ||||| Sbjct 270 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 211 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| ||||| | || || | |||||||| |||||||||||| ||||| | Sbjct 210 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGA 151 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || ||||| ||| | |||||| || | |||||||| || Sbjct 150 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGTAATGGTCTTT 91 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | ||| || || || || |||||| Sbjct 90 CCAGTTAAAGTCTTGACGAAGATCTGCATA 61 Score = 129 bits (142), Expect = 4e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || || ||||| ||||||||||| |||| |||| | ||||| Sbjct 1411 AACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTC 1352 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | || || | ||||| || ||| || || ||||| || Sbjct 1351 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTG 1292 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| ||| | || ||||| ||| | |||||| || | ||||||||||| Sbjct 1291 AATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTT 1232 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| |||||| || ||||| |||||| Sbjct 1231 TCCAGTCAAAGTTTTGACGAAAATCTGCATA 1201 Score = 129 bits (142), Expect = 4e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || || ||||| ||||||||||| |||| |||| | || || Sbjct 1639 AACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTC 1580 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | ||||| | |||||||| ||| || || ||||| || Sbjct 1579 AAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTG 1520 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| ||| | || ||||| ||| | |||||| || | ||||||||||| Sbjct 1519 AATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTT 1460 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| |||||| || ||||| |||||| Sbjct 1459 TCCAGTCAAAGTTTTGACGAAAATCTGCATA 1429 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || || ||||| || || |||||| ||| |||| | ||||| Sbjct 1183 AACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCTTC 1124 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | ||||| | |||||||| ||| || ||||||||||| Sbjct 1123 AAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTG 1064 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| | || || || || | |||||| || | |||||||| || Sbjct 1063 AATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTCTT 1004 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | ||| || || || || |||||| Sbjct 1003 TCCAGTTAAAGTCTTGACGAAGATCTGCATA 973 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || ||||| || |||||||| || |||| |||| | ||||| Sbjct 498 ACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCA 439 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | || || | ||||| || ||| || || ||||| || | Sbjct 438 AGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGA 379 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || || | |||||| || | ||||| ||||| Sbjct 378 ATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 319 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || ||||| ||||||||| Sbjct 318 CCAGTCAAGGTCTTGACAAATATTTGCATA 289 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||||||||||||||| || || ||||| |||||||| || ||| |||| | || || Sbjct 955 AACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTC 896 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | || || | |||||||| |||||| ||||| ||||| Sbjct 895 AAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTG 836 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || || | || || || || | |||||| || | ||||| ||||| Sbjct 835 GATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTT 776 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || ||||| || |||||| Sbjct 775 TCCAGTCAAGGTCTTAACAAAGATCTGCATA 745 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || ||||| || |||||||| || ||| |||| | || || Sbjct 726 ACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCA 667 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| ||||| | ||||| | |||||||| |||||| ||||| ||||| Sbjct 666 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 607 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || || || || | |||||| || | ||||| ||||| Sbjct 606 ATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 547 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || ||||| || |||||| Sbjct 546 CCAGTCAAGGTCTTAACAAAGATCTGCATA 517 >seq4 Length=926804 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||||||||| || || ||||| ||||||||||| |||| |||| | ||||| Sbjct 390711 AACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTC 390652 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | || || | ||||| || ||| |||||||| || || Sbjct 390651 AAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCTTG 390592 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || ||| ||| | || || ||||| | ||||| || | || |||||||| Sbjct 390591 AATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTT 390532 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||| || |||||||||||||| Sbjct 390531 GCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq4548 Length=666 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || || || || || ||||| |||||||| || ||| |||| | || || Sbjct 210 AACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTC 151 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| |||||| | ||||| | |||||||| |||||||||||| ||||| Sbjct 150 GAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTG 91 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || | || || ||||| | ||| || || | || ||||| || Sbjct 90 AATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTT 31 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | |||||| ||||| || ||||| Sbjct 30 TCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || || ||||| ||||||||||| |||| |||| | || || Sbjct 665 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 606 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| ||||| | ||||| | |||||||| |||||| ||||| ||||| Sbjct 605 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 546 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || || || || | |||||| || | ||||| ||||| Sbjct 545 ATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 486 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || ||||| || |||||| Sbjct 485 CCAGTCAAGGTCTTAACAAAGATCTGCATA 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357371515072355