Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3059 89.7 5e-13 seq4548 84.2 2e-11 >seq3059 Length=2231 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| ||||||||||| |||||| | || | ||| || Sbjct 1182 ACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCTTCA 1123 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || ||||||||||| | ||||||| || || || || || || || |||||||| Sbjct 1122 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGA 1063 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 |||||| ||||| | |||| |||||| | | || || || | || | || || Sbjct 1062 ATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTCTTT 1003 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| || || || |||||||| Sbjct 1002 CCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| ||||| || |||||||| | || | ||| || Sbjct 1638 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 1579 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||||||||| | ||||||| || || || || || || |||||||| || Sbjct 1578 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTGA 1519 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || |||| | || | ||||| | | || ||||| | || | ||||| Sbjct 1518 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTT 1459 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| |||||| || ||||||||||| Sbjct 1458 CCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 >seq4548 Length=666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| ||||| || |||||||| | || | ||| || Sbjct 665 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 606 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||||||||| | ||||||| || || || || || || || || ||||| | Sbjct 605 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 546 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||| | |||| || | |||||| | | || || |||| || | ||||| Sbjct 545 ATCTTTGACTTAACGTTG-TCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTT 487 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || || ||||| |||||||| Sbjct 486 TCCAGTCAAGGTCTTAACAAAGATCTGCAT 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475472846496720