Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4548 122 8e-23 seq3059 122 8e-23 seq4 122 8e-23 seq38 89.7 5e-13 seq5 86.0 6e-12 >seq4548 Length=666 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||||||||| || || || || | ||| | ||| || | |||| Sbjct 203 TGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCGAGTTGT 144 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||||| ||| ||||| || ||||| |||||||| |||||||| ||| Sbjct 143 TTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTT 84 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||| || |||| || ||||| ||||| | || || || || Sbjct 83 GACTTGA-CGTTATCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTTTCCAGT 25 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || |||||| ||||| || ||||| Sbjct 24 TAAAGTTTTAACAAAGATCTGCAT 1 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || ||||| ||||||||||| || ||||| || ||| | ||| || | || Sbjct 660 ATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCAAGCTG 601 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| || | ||||||| ||| ||||| || ||||| |||||||| ||||| | | | Sbjct 600 TTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGA-TCT 542 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||| | | || | || | |||||| |||| || || |||||||||| ||||| || | Sbjct 541 TTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAG 482 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | | || || ||||| || ||||| Sbjct 481 TCAAGGTCTTAACAAAGATCTGCAT 457 >seq3059 Length=2231 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | ||| || ||||| ||||||||||| || ||||| Sbjct 291 ATACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCA 232 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | ||||||||| || | || |||| ||| ||||| || Sbjct 231 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGT 172 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| |||||||| || ||||| || | |||||||||| || Sbjct 171 GGAATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCT 112 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || |||| ||| || || || || ||||| Sbjct 111 ACCTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | ||| || ||||| |||||||| |||||||||||| Sbjct 1203 ATACCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCG 1144 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||||||| || | ||||||| ||| ||||| || Sbjct 1143 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGT 1084 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||||||||| |||| || | |||||| |||| || Sbjct 1083 GGGATCCCTTCCTTGTCTTGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCT 1024 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || |||| ||| || || || || ||||| Sbjct 1023 ACCTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | ||| || ||||| ||||||||||| || ||||| Sbjct 1431 ATACCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCA 1372 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | ||||||||| || | || |||| ||| || || || Sbjct 1371 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGT 1312 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||||||||| || ||||| || | |||||||||| || Sbjct 1311 GGGATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCT 1252 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||||| || || | |||||| || ||||| ||||| Sbjct 1251 ACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || | ||| || ||||| ||||||||||| || ||||| | Sbjct 1656 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAG 1597 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| || | |||||||| || | ||||||| ||| ||||| || || Sbjct 1596 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 1537 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || ||||||||||| || ||||| || | |||||||||| || ||| Sbjct 1536 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACT 1477 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||||| ||||| || || | |||||| || ||||| ||||| Sbjct 1476 TCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | ||| || ||||| || || ||||| || || || Sbjct 519 ATACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCA 460 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | ||| ||||| || | || |||| ||| || || || Sbjct 459 GAGAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 400 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||||||||| || ||||| || | |||||| |||| || Sbjct 399 GGGATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCT 340 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| ||||| || || | || || ||||| |||||||| Sbjct 339 ACCTCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 >seq4 Length=926804 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || | ||| || ||||| ||||||||||| || ||||| | Sbjct 390728 CCTCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 390669 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| || | ||||||||| || | || |||| ||| || || || || Sbjct 390668 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGG 390609 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||||||||||||||| || ||||| || | || || |||| ||| || Sbjct 390608 ATTCCTTCTTTATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACC 390549 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | |||||||| || | ||| || |||||||||||||| Sbjct 390548 TCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq38 Length=203164 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 ||||| ||||| || || || |||||||| ||||| ||||| ||| | ||| | | Sbjct 170964 CGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCTTTTACATTTTCGATG 170905 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || || || | ||||||||| ||||| | || || || || ||||| || || |||||| Sbjct 170904 GTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGAGTCTTAACGAAAATT 170845 Query 45336 TGCATCGCGCGACCAATTTAATAATTTAA 45364 ||||| || ||||||||||| ||| Sbjct 170844 TGCATTTCGTCTAAAATTTAATAATATAA 170816 >seq5 Length=897882 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274 ||||||||||| || ||||| |||||||| || || || || || | | | | || || Sbjct 723922 CGTTGCTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTA-GTCTTAACATTATCAAC 723864 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 || ||||| | ||| || || ||||| | ||||| || |||| ||||||||| ||||| Sbjct 723863 AGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAAGTTTTTACGAAAAT 723804 Query 45335 TTGCAT 45340 |||||| Sbjct 723803 TTGCAT 723798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451976627861880