Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq64 147 3e-30 seq1 87.8 2e-12 >seq64 Length=153875 Score = 147 bits (162), Expect = 3e-30 Identities = 365/546 (67%), Gaps = 11/546 (2%) Strand=Plus/Plus Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 || ||||| ||||| || ||| |||| ||||| ||||| | || ||||||||| | Sbjct 122693 GAAACTGGCACACCTTACATGGTTTATAAAGATCATTGTAATCGGAAAAGTAATCAACAA 122752 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT-TTACAGACAA 112423 ||| | || |||||| |||| || |||||||| || ||| | |||| || || | Sbjct 122753 AATCTTGGAACTATCAAGTGTTCTAATCTCTGTACCGAGATCGTTGAATATTGTTCACCA 122812 Query 112424 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 112483 ||||| ||||| ||||| || | || || |||||| | | ||| ||| ||| Sbjct 122813 -GATGAAGTTGCTGTATGTAATCTAGGGTCTATTGCTCTCAATAGATTTGTTGATATAGA 122871 Query 112484 GACAAAGACATTTGATT---ATGAAA---AACTCCACGAAGTTACGAAAACTGTCACAAA 112537 | || | || || || | |||||||| | ||| | |||| | | || | Sbjct 122872 AAATGGGAAACCTGTTTTCAATTTTACTCAACTCCACTATGTTGCTAAAATTTTGACCAG 122931 Query 112538 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTA 112596 || |||| | |||| ||| |||| |||||| ||| ||| ||| | || |||| Sbjct 122932 GAATTTAAATAAGATTATCGATGTGAATTATTACCCAGTTCCAGAA-GCTAGGAATTCTA 122990 Query 112597 ATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTT 112656 ||||||||||||||||||| ||| | ||||| |||||| | || |||| |||||| || Sbjct 122991 ATATGAGACACCGTCCAATAGGTATTGGTGTTCAAGGTTTGGCAGATGCATTCATGCTCA 123050 Query 112657 GTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAA 112716 | | ||||| || |||| || ||| | ||| | || || || |||| Sbjct 123051 TGAGATATCCATTTACCTCACCTCAAGCTAAAGAACTTAATAAACAGATTTTCGAAACAA 123110 Query 112717 TGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAA 112776 | || || | || | ||||| | || ||||| || |||||| || ||||||| Sbjct 123111 TTTACCATGGTGCCTTGGAGGCTTCATGTGAATTGGCTGAACGTGATGGACCTTATGAAA 123170 Query 112777 CCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGA 112836 | | ||| || || |||| || | || | ||||||| ||||||| |||| || || Sbjct 123171 CTTATGAAGGATCGCCAGTATCTAAGGGAATTCTTCAATACGATATGT-GGAATGTCAGG 123229 Query 112837 CCAAGC 112842 |||||| Sbjct 123230 CCAAGC 123235 >seq1 Length=1686976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 176893 ATCACGAACATTCTTACACTTC-CCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAA 176951 |||||| |||||| ||| || |||||||| || || || || |||| ||| || || | Sbjct 470930 ATCACGTACATTCA-ACATTTTACCACGAAGTGGAAATACCCCATAGTAATCACGTCCCA 470872 Query 176952 CCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTG 177011 | ||| ||||| | ||| || | ||||| || ||||| ||||| || | ||||||| Sbjct 470871 CAACACCAAGACCGGAAACTGCTAATGTTTTGGCTGAATCTCCCTCAGTAAGAATGAGTG 470812 Query 177012 TACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAG 177071 |||| ||| || | ||||| |||| || ||||| || | ||| || ||||| Sbjct 470811 TACATTTGTAGGAATTCTTTGTACCAGCCTCATTAGCATCCTCAAGTTTTGGTATACCTT 470752 Query 177072 TAA-TTTTG--GACTT 177084 ||| ||||| ||||| Sbjct 470751 TAACTTTTGTTGACTT 470736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620705908106160