Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq64 95.1 1e-14 seq1 87.8 2e-12 >seq64 Length=153875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| || || |||||||| ||| || ||||| | ||| ||||| | ||||| ||| Sbjct 122553 TGGTCGACGTAACGTGCTGTATTATTAAAAACCCTCAACATTGGAATCAATCCATTTGAT 122494 Query 110830 TGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCA 110889 |||||||| || | ||| || ||| || | ||| ||| | || | ||| Sbjct 122493 GTCCCATTTGTCCCACCAATAAATGAACCATTAGCTCTAATACAGTGAACATTTAAGCCA 122434 Query 110890 ATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCA 110949 |||||||| || | || || || || | | ||||| | ||||| || || Sbjct 122433 ATACCACCTGCAGATTTCGAGATCAAAGCGCATTGCTTAAGTGTGTCGTAAATCCCTTCT 122374 Query 110950 ATCGAAT---CTGCC-TTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 || |||| | ||| ||||| ||| ||||| || || |||| ||||||||| || Sbjct 122373 ATTGAATCACCAGCCATTGTT---AATAAGAAA-CATGAGGACAACTGAGGACGCCTAGT 122318 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGT 111064 |||||| ||||| | || || | |||||| ||||| || | || ||||| | | || Sbjct 122317 TCCCGCGTTGAATAAAGTTGGAGAAGCATGAGTGAAC-CACTTCTGAGACATATAATCGT 122259 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 | || || | | || | ||||| |||||||| |||| ||||| ||||| || | Sbjct 122258 AAGTCTCAATGACAGAATTAATATCTTCTCCGTGAATCCCAACAGCAACACGCATCAATA 122199 Query 111125 TATATTGAGG 111134 || |||||| Sbjct 122198 GATGTTGAGG 122189 >seq1 Length=1686976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 |||||||| ||||||||||||||||| | ||| | ||||| || ||||| | || Sbjct 470911 TTACCACGAAGTGGAAATACCCCATAGTAATCACGTCCCACAACACCAAGACCGGAAACT 470852 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCC 168549 || | ||||| |||||||| ||||| || | ||||||||||| || || | Sbjct 470851 GCTAATGTTTTGGCTGAATCTCCCTCAGTAAGAATGAGTGTACATTTGTAGGAATTCTTT 470792 Query 168550 GTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACC 168587 |||||||| | || ||||| || | ||| || ||||| Sbjct 470791 GTACCAGCCTCATTAGCATCCTCAAGTTTTGGTATACC 470754 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110929 AGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGAC 110988 ||||| |||| || || ||||| ||||| | | | | | | |||||| ||| | Sbjct 916170 AGTGT--CATAGATTCCTTCAATAGAATCATCACTCATCGTTAACAAAAAGCAGGAACAA 916227 Query 110989 ATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT 111048 | |||||| || | || || ||||| || | || || | |||| || || || | | Sbjct 916228 AGCTGAGGTCGTAGGGTACCAGCATTAAATAACGTTGGAGATCCATGGATAAAAAGTCGT 916287 Query 111049 TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATG 111108 | ||||| | ||||||| | | || || | | ||||| ||| |||||||||||| Sbjct 916288 TTTGACATATATCTGTATGTCTGAATAGCAGATGCAATATCTTCACCATGAATACCAATG 916347 Query 111109 GCAACTCGCATGAACATATATTGAGGCGTTTC 111140 ||||| ||||| | ||||| |||||| |||| Sbjct 916348 GCAACACGCATAAGCATATGTTGAGGTCTTTC 916379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588941375573400