Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq64 82.4 9e-11 >seq64 Length=153875 Score = 82.4 bits (90), Expect = 9e-11 Identities = 240/365 (66%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 || || || ||||| ||||| || | | ||||||||| | |||| |||| ||| Sbjct 122547 ACGTAACGTGCTGTATTATTAAAAACCCTCAACATTGGAATCAATCCATTTGATGTCCCA 122488 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 |||||||| | |||| || ||| ||||| | | || | | | |||||||| Sbjct 122487 TTTGTCCCACCAATAAATGAACCATTAGCTCTAATACAGTGAACATTTAAGCCAATACCA 122428 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 || || | || ||||| || || | | |||| || | || || || | ||||| Sbjct 122427 CCTGCAGATTTCGAGATCAAAGCGCATTGCTTAAGTGTGTCGTAAATCCCTTCTATTGAA 122368 Query 107132 TC----CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 107187 || | ||||| |||| ||| || ||||| ||| || | || || || Sbjct 122367 TCACCAGCCATTGTT---AATAA-GAAACATGAGGACAACTGAGGACGCCTAGTTCCCGC 122312 Query 107188 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCT 107246 ||||| | ||||| | || ||| ||||| || | || ||||| | ||||| |||| Sbjct 122311 GTTGAATAAAGTTGGAGAAGCATGAGTGAAC-CACTTCTGAGACATATAATCGTAAGTCT 122253 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306 | | |||||||| ||| ||||| ||||| || || | || |||||||| || | | || Sbjct 122252 CAATGACAGAATTAATATCTTCTCCGTGAATCCCAACAGCAACACGCATCAATAGATGTT 122193 Query 107307 GGGGT 107311 | ||| Sbjct 122192 GAGGT 122188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589946116503720