Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq16 201 1e-46 >seq16 Length=461423 Score = 201 bits (222), Expect = 1e-46 Identities = 474/711 (67%), Gaps = 6/711 (1%) Strand=Plus/Minus Query 154418 TAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAA 154477 ||| ||||| ||| | || || |||| |||| | || || || |||||||| || Sbjct 57231 TAAGGATTTGTCACTTGTTCATTCTATGATTCCCTTAGGGTCATGTACTATGAAATTGAA 57172 Query 154478 TGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATAC 154537 ||| |||||||| | | || | ||||| | || | || | |||||| | Sbjct 57171 TGCCGCAGCAGAGATGTTACCCTTAACATGGCCAACATTATCAAATATACATCCATTTGT 57112 Query 154538 ACCTATGATACAGACCATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATG 154597 ||| || || | | |||||||| |||||| | |||| | | |||||| | || Sbjct 57111 ACCAATTGAGCAAGCTAATGGTTATCAAAAAATTTTCAATGATCTTGAAAAATGGCTTTG 57052 Query 154598 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 154657 ||| | || || | ||| | || | ||||| || ||| | | ||||| || Sbjct 57051 TGAAGTTACTGGTTATGACAACTTTTCTCTCCAACCAAATAGTGGAGCTAATGGTGAATA 56992 Query 154658 TGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGT 154717 ||| || | ||||| || | | |||| | || ||| | || || ||||| | Sbjct 56991 TGCTGGTTTATTAGCTATTAAGGGTTACCTTAAATCTATTGGACAAGAGAATAGAAAAAT 56932 Query 154718 ATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGAT 154777 ||| | || ||| ||||| |||||||| || |||||| ||| ||||| | Sbjct 56931 TTGTCTCATTCCAACATCAGCTCATGGAACAAACCCTGCTTCTGCATCAATGGCTAACTT 56872 Query 154778 GAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAA 154837 ||||| || ||| | | ||| | | ||||||||| | ||||||||| Sbjct 56871 TAAAGTCGTTCCTGTAGATTCTGACAAACACGGTAACATAAATTACAAAGATCTTTCTTT 56812 Query 154838 GAAAGCAATCATGAATACATT--TGAACTGTCATG-TATTATGATTACATACCCATCTAC 154894 ||| ||| | |||| | ||| || | || ||| ||| | || || |||||||| Sbjct 56811 GAAGGCAGAAA--AATATGGTAGTGATCT-TGGTGCTATAATGGTAACTTATCCATCTAC 56755 Query 154895 ACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGG 154954 ||||||||| ||||||| |||||| | | | ||||| | || ||||| ||||| || Sbjct 56754 ACATGGTGTGTTTGAAAGTAACATCATTGATGTTTGTAATAAAGTCCATGAAAATGGAGG 56695 Query 154955 TCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGA 155014 || || |||||||| ||||| ||| | ||||||||||||||| || | |||| | || Sbjct 56694 ACAAGTTTATCTTGACGGAGCCAATTTTAATGCACAGGTAGGATTATGTAGACCAGGGGA 56635 Query 155015 GTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGG 155074 |||||| ||||||| ||| | || | ||||| |||||||||||||| || ||||| Sbjct 56634 CTATGGTAGTGATGTATCACATTTGAATCTTCATAAGACATTCTGTATTCCGCACGGAGG 56575 Query 155075 TGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATT 155125 ||| ||||| || | |||||||| ||||| || ||||| | ||||| Sbjct 56574 TGGTGGTCCAGGAATGGGTCCTATTGGTGTTAAAAGCCATCTTGCTCCATT 56524 Score = 86.0 bits (94), Expect = 7e-12 Identities = 215/325 (66%), Gaps = 15/325 (5%) Strand=Plus/Minus Query 153740 GGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGG 153799 |||| ||| || |||||||| ||||||||||||| ||| | |||||||| || Sbjct 57951 GGGAGCTGAGATAGCTGTAGGATCAGCTCAAAGGTTTGGTACTCCATTAGGATATGGTGG 57892 Query 153800 TCCTCATGCTGCATTCTTTGCA-------ACAACA---GACAAGTA----TAAGA-GAAA 153844 || ||||||| |||| | || | || | || |||| | | | | Sbjct 57891 ACCACATGCTGGATTCATGTCATGTGTTAAAAATATGGGAAAAGTTCCTCTGTCACGTAT 57832 Query 153845 GATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATT 153904 ||| || || ||||| || ||| ||| ||| | | |||||||||||| |||| Sbjct 57831 GATGCCAGGAAGAATAGTTGGTGTCTCAAAGGATGTTCATGGTAATAAAGCACTTCGATT 57772 Query 153905 AGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCAC 153964 ||| || || || ||||| || ||||| || | || ||||| || || ||||| || Sbjct 57771 AGCTCTTCAAACAAGAGAACAACATATTAGACGTGATAAAGCTACATCAAATATCTGTAC 57712 Query 153965 AGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGG 154024 ||| || ||| | | || || | ||| | | ||||||| |||||||| | || | Sbjct 57711 AGCACAAGCATTACCAGCAAACCTTGCTGCAATGTATGCAGTTTATCATGGACCTAATCG 57652 Query 154025 ACTACATGCTATAGCAAGAAGAATT 154049 |||| || |||||||| | |||| Sbjct 57651 TTTACAAGCAATAGCAAGGAAAATT 57627 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 153253 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 153312 |||| | ||| ||||| || ||||| ||| | || ||||| |||||| | || ||| Sbjct 58426 GAAATATGCTTCAGAATGCTGGTTGGACAACACCATATACTCCATATCAACCGGAACTAT 58367 Query 153313 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGAT 153372 | ||||||||| | |||| | || | |||| ||||| | ||||| || | || || Sbjct 58366 CACAGGGAAGACTTGAAGGTCTACTAAATTTTCAAACCATGATCACTGATTTAACTGGCC 58307 Query 153373 TACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGC 153412 | |||||||||||| ||| || | || ||||| ||||| Sbjct 58306 TTGAAATAGCAAACGCTTCTTTACTTGACGAAGCTACTGC 58267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579178749527520