Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq16 217 2e-51 >seq16 Length=461423 Score = 217 bits (240), Expect = 2e-51 Identities = 515/771 (67%), Gaps = 8/771 (1%) Strand=Plus/Minus Query 159034 GTATTTAAAAAATATCATAGTGAGACTGACA-TGATGAGATATATCTATGAGTTAGCATC 159092 || || || | ||||||| |||| || || | | |||||||| | | |||| | Sbjct 57290 GTCTTCAATACATATCATTCAGAGA-TGGCAGTTACAAGATATATGAAAAAATTAGAAAA 57232 Query 159093 AAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAA 159152 || ||||| ||| | || || |||| |||| | || |||||||||||| | || Sbjct 57231 TAAGGATTTGTCACTTGTTCATTCTATGATTCCCTTAGGGTCATGTACTATGAAATTGAA 57172 Query 159153 CGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATAC 159212 || ||| |||| || | || | ||||| | || | || | |||||| | Sbjct 57171 TGCCGCAGCAGAGATGTTACCCTTAACATGGCCAACATTATCAAATATACATCCATTTGT 57112 Query 159213 ACCTATGATACAGACCATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATG 159272 ||| || || | | ||||||||||||||| | |||| | | |||||| | || Sbjct 57111 ACCAATTGAGCAAGCTAATGGTTATCAAAAAATTTTCAATGATCTTGAAAAATGGCTTTG 57052 Query 159273 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 159332 ||| | || || | ||| | || | ||||| || ||| | | ||||| || Sbjct 57051 TGAAGTTACTGGTTATGACAACTTTTCTCTCCAACCAAATAGTGGAGCTAATGGTGAATA 56992 Query 159333 TGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGT 159392 ||| || | ||||| || | | |||| | || ||| | || || ||||| | Sbjct 56991 TGCTGGTTTATTAGCTATTAAGGGTTACCTTAAATCTATTGGACAAGAGAATAGAAAAAT 56932 Query 159393 ATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGAT 159452 ||| | || ||| ||||| |||||||| || ||||| || ||| ||||| | Sbjct 56931 TTGTCTCATTCCAACATCAGCTCATGGAACAAACCCTGCTTCTGCATCAATGGCTAACTT 56872 Query 159453 GAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAA 159512 ||||| || ||| | | ||| | | || |||||| | ||||||||| Sbjct 56871 TAAAGTCGTTCCTGTAGATTCTGACAAACACGGTAACATAAATTACAAAGATCTTTCTTT 56812 Query 159513 GAAAGCAATCATGAATACATT--TGAACTGTCATG-TATTATGATTACATATCCATCTAC 159569 ||| ||| | |||| | ||| || | || ||| ||| | || ||||||||||| Sbjct 56811 GAAGGCAGAAA--AATATGGTAGTGATCT-TGGTGCTATAATGGTAACTTATCCATCTAC 56755 Query 159570 ACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGG 159629 ||||||||| ||||||| ||||||| | | ||||| | || ||||| ||||| || Sbjct 56754 ACATGGTGTGTTTGAAAGTAACATCATTGATGTTTGTAATAAAGTCCATGAAAATGGAGG 56695 Query 159630 TCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGA 159689 || || |||||||| || || ||| | |||||||||||||| || | |||| | || Sbjct 56694 ACAAGTTTATCTTGACGGAGCCAATTTTAATGCACAGGTAGGATTATGTAGACCAGGGGA 56635 Query 159690 CTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGG 159749 ||||||| ||||||| ||| | || | |||||||||||||||||||| || ||||| Sbjct 56634 CTATGGTAGTGATGTATCACATTTGAATCTTCATAAGACATTCTGTATTCCGCACGGAGG 56575 Query 159750 TGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATT 159800 ||| ||||| || | |||||||||||||| || ||||| | ||||| Sbjct 56574 TGGTGGTCCAGGAATGGGTCCTATTGGTGTTAAAAGCCATCTTGCTCCATT 56524 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 |||||||||||| ||||||| || || || ||||| || ||||| ||| | || ||| Sbjct 57791 GGTAATAAAGCACTTCGATTAGCTCTTCAAACAAGAGAACAACATATTAGACGTGATAAA 57732 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCA 158679 || || || ||||| |||||||||||| | | || || | ||| | |||||| Sbjct 57731 GCTACATCAAATATCTGTACAGCACAAGCATTACCAGCAAACCTTGCTGCAATGTATGCA 57672 Query 158680 GCATATCATGGTGCAGATGGACTACATGCTATAGCAAGAAGAATT 158724 | |||||||| | || | |||| || |||||||| | |||| Sbjct 57671 GTTTATCATGGACCTAATCGTTTACAAGCAATAGCAAGGAAAATT 57627 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 157928 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 157987 |||| | ||| ||||| || ||||| ||| | || ||||| |||||| | || ||| Sbjct 58426 GAAATATGCTTCAGAATGCTGGTTGGACAACACCATATACTCCATATCAACCGGAACTAT 58367 Query 157988 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGAC 158047 | ||||||||| | |||| | || | |||| ||||| | ||||| || | || || | Sbjct 58366 CACAGGGAAGACTTGAAGGTCTACTAAATTTTCAAACCATGATCACTGATTTAACTGGCC 58307 Query 158048 TACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGC 158087 | ||||||||||| ||| || | || ||||| ||||| Sbjct 58306 TTGAAATAGCAAACGCTTCTTTACTTGACGAAGCTACTGC 58267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588016629940080