Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4548 194 4e-44 seq3059 187 6e-42 seq4 141 2e-28 seq38 102 2e-16 seq5 95.1 3e-14 >seq4548 Length=666 Score = 194 bits (214), Expect = 4e-44 Identities = 169/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| || || |||||||| ||||| || | ||||||||| ||||| || Sbjct 210 AACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTC 151 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| || || || ||||| || | || |||||||||||| ||||| |||||||||||||| Sbjct 150 GAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTG 91 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||||||| |||||||| || ||| |||||||||||| || | ||||| Sbjct 90 AATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTT 31 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||||||| || || | ||||| Sbjct 30 TCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 Score = 168 bits (186), Expect = 1e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| ||||| || |||||||| | |||||||| ||||| || ||||| Sbjct 659 TGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCAAGCTGT 600 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || |||||||||||| ||||| |||||||||||||| || ||| Sbjct 599 TTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTT 540 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| ||||||||||| ||| ||| || || || |||| || ||||| ||| Sbjct 539 GACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTC 480 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 479 AAGGTCTTAACAAAGATCTGCAT 457 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || |||||||| || || ||||| || | ||||||||| ||||| ||||| || Sbjct 432 GTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCGAGTTG 373 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || | || |||||||||||| || || || ||||||||||| || || Sbjct 372 TTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTT 313 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| ||||| ||||||||||| ||| || || ||||| || | || ||||| || Sbjct 312 TGACTTAACGTTATCAATGGTGTCAGAAGGCTCTACCTCAAGAGTGATAGTTTTTCCAGT 253 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | |||||| Sbjct 252 CAAGGTCTTAACAAAGATTTGCAT 229 >seq3059 Length=2231 Score = 187 bits (206), Expect = 6e-42 Identities = 163/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| || || Sbjct 1176 TGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCTTCAAGTTGT 1117 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || |||||||||||| || || ||||| |||||||||||||| Sbjct 1116 TTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATTTTC 1057 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || |||||||| ||| ||| || ||||| |||| |||||||| || Sbjct 1056 GACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTCTTTCCAGTT 997 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 996 AAAGTCTTGACGAAGATCTGCAT 974 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| |||||||| ||||| || | ||||||||| ||||| || ||||| Sbjct 948 TGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCAAGCTGT 889 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || |||||||||||| ||||| |||||||||||||| || ||| Sbjct 888 TTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTT 829 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| ||||||||||| ||| ||| || || || |||| || ||||| ||| Sbjct 828 GACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTC 769 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 768 AAGGTCTTAACAAAGATCTGCAT 746 Score = 168 bits (186), Expect = 1e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| ||||| || |||||||| | |||||||| |||||||| || || Sbjct 264 TGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGT 205 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || |||||||||||| ||||| ||||||||||||||||| || Sbjct 204 TTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTG 145 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||| ||||| ||| ||| || ||||| |||| |||||||| || Sbjct 144 GATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGTAATGGTCTTTCCAGTT 85 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 84 AAAGTCTTGACGAAGATCTGCAT 62 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || |||||||| || || ||||| || | ||||||||| ||||| || ||||| Sbjct 720 TGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCAAGCTGT 661 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || |||||||||||| ||||| |||||||||||||| || ||| Sbjct 660 TTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTT 601 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| ||||||||||| ||| ||| || || || |||| || ||||| ||| Sbjct 600 GACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTC 541 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 540 AAGGTCTTAACAAAGATCTGCAT 518 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| ||||| || |||||||| | |||||||| ||||| || ||||| Sbjct 1632 TGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCAAGCTGT 1573 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || |||||||||||| || || || || || |||||||| || Sbjct 1572 TTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTGAATCTTG 1513 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||| ||||| ||| ||| |||||||| |||| || ||||| ||| Sbjct 1512 GATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTTCCAGTC 1453 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| | ||||| Sbjct 1452 AAAGTTTTGACGAAAATCTGCAT 1430 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| ||||| || |||||||| | |||||||| |||||||| || || Sbjct 1404 TGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGT 1345 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || |||||| ||||| || || || || || |||||||| || Sbjct 1344 TTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGAATCTTG 1285 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||| ||||| ||| ||| |||||||| |||| || ||||| ||| Sbjct 1284 GATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTTCCAGTC 1225 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| | ||||| Sbjct 1224 AAAGTTTTGACGAAAATCTGCAT 1202 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || |||||||| || || ||||| || | |||||||| |||||||| || ||| Sbjct 492 TGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGC 433 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || |||||| ||||| || || || || || |||||||| || Sbjct 432 TTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGAATCTTG 373 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||||||||| ||| ||| || || || |||| || ||||| ||| Sbjct 372 GATTTGACATTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTC 313 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | |||||| Sbjct 312 AAGGTCTTGACAAATATTTGCAT 290 >seq4 Length=926804 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| ||||| || |||||||| | |||||||| |||||||| || || Sbjct 390704 TGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGT 390645 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || |||||| ||||| || || |||||||| |||||||| || Sbjct 390644 TTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGAATCTTA 390585 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||| || || ||| || || ||||| || | || || |||||| Sbjct 390584 GATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTC 390525 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || | |||||| Sbjct 390524 AAAGTCTTAACAAAAATTTGCAT 390502 >seq38 Length=203164 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| |||||||||||||| || || |||||||||||||| ||||| Sbjct 170981 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGG 170922 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || || ||||| || || || |||||||| || | ||||| || || | Sbjct 170921 CTTTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAA 170862 Query 195119 AAGTTTTTACGAACACTTGCATTT 195142 ||| || ||||| | |||||||| Sbjct 170861 GAGTCTTAACGAAAATTTGCATTT 170838 >seq5 Length=897882 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| ||||| |||||||| ||||| |||||||| || || || || Sbjct 723939 TACCGGCAAAAATAAGCCGTTGCTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAG 723880 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || || |||| || || || || || ||||| || | || ||||| || | Sbjct 723879 TCTTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTA 723820 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||||||||||| | |||||| Sbjct 723819 AAGTTTTTACGAAAATTTGCAT 723798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109414745759201