Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq21 188 8e-43 seq108 120 4e-22 >seq21 Length=323752 Score = 188 bits (208), Expect = 8e-43 Identities = 490/738 (66%), Gaps = 12/738 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| || || | ||| || ||||| ||| |||| || || ||||| || || |||| Sbjct 30242 CATTACACCGAATTTCTGGTATTCAGATACTT-TCTTCTCAAAGAAATTGGTTTTGCCTT 30300 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 | | ||| | ||| |||||||||||||||| || |||||||| | | ||| Sbjct 30301 CAATTGAGAGATTAACCATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACAAT 30360 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | ||| || || ||| |||||| | || || || | |||||||| | | | Sbjct 30361 TAAGTTCTACCAATAGATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAAT 30420 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || || || | | || |||| ||||| |||| || ||||| || | || | Sbjct 30421 TCATTCCGATCATATCAACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGG 30480 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 ||||| ||| ||| | ||| |||||||| ||| | | || || | ||| Sbjct 30481 CATCTCTAATTATTTCCTTTATACGTTCTTCAGATGGCTTGTTCTCCAAGTAACTGTACA 30540 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 | |||||||||||||| ||||| || ||||||| ||||| ||||| ||| | Sbjct 30541 TAAGACATGCAAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTG 30600 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 |||| || ||||| || || | ||| |||| ||| ||||| || ||||| || ||||| | Sbjct 30601 TTAACCCGGGCATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGA 30660 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 |||| || |||||||| |||||||| || | | |||| || ||||| | | | | Sbjct 30661 AGAATATTCCTTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGT 30720 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTT-TAATTTAACACATTCAATTGTTTCAATT 37409 | | ||||||| || | |||||| || || | | | | | |||| | ||| Sbjct 30721 CGGCAATCCATCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAA-A 30779 Query 37410 GCTTTTAAGAGAAAGtttttttCT-TCA--CT-ATCTGTTATATAAGTATCAATTAGTAA 37465 || || ||| ||||| ||||| ||| || ||| || || || ||||| ||| Sbjct 30780 GCGTTGAAG----AGTTTATTTCTCTCATCCTGATCACGAATGTAGGTTTCAATAAGTTT 30835 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||||| ||| ||||||||||| || || || ||||||||||| ||| | | || Sbjct 30836 CGAGTACATCTCACTATGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGC 30895 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 || | | || || || || |||| || | | |||| || || ||||| || ||||| Sbjct 30896 CTCGGGGACCTGGACTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATC 30955 Query 37586 ACTAGCTGCAAAGAAAGC 37603 || |||||||| || Sbjct 30956 CGATGCAGCAAAGAAGGC 30973 >seq108 Length=97238 Score = 120 bits (132), Expect = 4e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 153286 CAGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTG 153345 |||| ||||||||||| ||||||||||| ||||| | |||||| | || ||||| |||| Sbjct 87673 CAGGAGTTTTACATACCAAATTTTGGATTGTTGACCAAAAACATATCTACATAGGTAGTG 87614 Query 153346 CTAATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATA 153405 | || |||||||||| |||| | ||| |||| |||||| | ||| || ||| | || Sbjct 87613 CAAACATGGATTGGAAATCATTGACTGAAGTCAAAGAAATGGGTGTATTAATAGAAGATT 87554 Query 153406 ATTCTTGTATAGCTAATGAACTAACTAAAATATTTAACATATAT 153449 ||| ||| |||| |||| || ||||||||||| ||||| Sbjct 87553 GTTCCTGTCTAGCACATGATTTACATAAAATATTTACAGTATAT 87510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592281979176120