Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4 167 2e-36 seq3059 152 4e-32 seq4548 149 5e-31 seq38 89.7 4e-13 seq5 86.0 5e-12 >seq4 Length=926804 Score = 167 bits (184), Expect = 2e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| ||||||||||| || || ||||| || |||||||| | | Sbjct 390728 CCTCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 390669 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || ||||| || || | |||||||| || || Sbjct 390668 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGG 390609 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||||||||| || ||| ||| | || | || ||||| | || || Sbjct 390608 ATTCCTTCTTTATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACC 390549 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 |||||||||| |||||||| || ||||| || ||||| || |||||||||| Sbjct 390548 TCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCATGGTTA 390497 >seq3059 Length=2231 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| |||||||| || || || ||||| || |||||||| | | Sbjct 1428 CCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAG 1369 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || ||||| || || | |||||||| || || Sbjct 1368 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGG 1309 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||||||||| || ||| ||| | || | |||||| || | ||| ||| Sbjct 1308 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACT 1249 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| || || |||||||| || || |||||||| Sbjct 1248 TCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 149 bits (164), Expect = 5e-31 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || ||||||||||| || || ||||| || |||||||| | | Sbjct 288 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 229 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || ||||| || || | ||||| || || ||| Sbjct 228 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 169 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||||||| || ||| ||| | || | |||||| || | ||| || Sbjct 168 ATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACC 109 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 |||||||| | || || || |||||||| || || || |||||||| | | |||||| Sbjct 108 TCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCATACCTCCACGAAGA 49 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| |||||||| || || || ||||| || |||||||| | | Sbjct 1656 CCTCCACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAG 1597 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | || || || ||||| ||||| | ||||| || || || Sbjct 1596 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 1537 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||||||||| || ||| ||| | || | |||||| || | ||| ||| Sbjct 1536 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACT 1477 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| || || |||||||| || || |||||||| Sbjct 1476 TCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| |||||||| || || || ||||| ||||| ||||||| Sbjct 1200 CCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAA 1141 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || ||||| ||||| | ||||| || || || Sbjct 1140 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 1081 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||||||||| || ||| | || | |||||||| | ||| || Sbjct 1080 ATCCCTTCCTTGTCTTGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACC 1021 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || || |||||||| || || || |||||||| Sbjct 1020 TCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || ||||||||||| || ||||| || || ||||| || | | Sbjct 516 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAG 457 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | |||||| || ||||| || || | |||||||| || || Sbjct 456 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGG 397 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||||||||| || ||| ||| | || | |||||||| | ||| || Sbjct 396 ATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTACC 337 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | ||||| || || || || || |||||||| ||||| Sbjct 336 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||||||||||||||| || || ||||| || ||||| || | Sbjct 972 CCTCCACGGAGACGGAGAACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAA 913 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | || || || ||||| || || | ||||| || || ||| Sbjct 912 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGA 853 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| || ||| || || | || | |||||||| | ||| || Sbjct 852 ATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACC 793 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | ||||| || || || || || ||||| |||||||| Sbjct 792 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 746 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || ||||||||||| || ||||| || || ||||| || | Sbjct 744 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 685 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | || || || ||||| ||||| | ||||| || || ||| Sbjct 684 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 625 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| || ||| || || | || | |||||||| | ||| || Sbjct 624 ATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACC 565 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | ||||| || || || || || ||||| |||||||| Sbjct 564 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 518 >seq4548 Length=666 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| || || || || ||||| ||||| || ||||| || | Sbjct 227 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCAGAA 168 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || || || ||||| | ||||| || || ||| Sbjct 167 AGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGA 108 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||||||| ||| || || | || | || ||||| | ||||||| Sbjct 107 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCACT 48 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || ||||||||||| ||||| |||||||| Sbjct 47 TCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 >seq38 Length=203164 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | ||| ||||| || || || || |||||||| ||||| ||||| Sbjct 170981 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGG 170922 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| |||| | || || || | || ||||||||||||| || || || || | Sbjct 170921 CTTTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAA 170862 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 170861 GAGTCTTAACGAAAATTTGCAT 170840 >seq5 Length=897882 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | || || || || || ||||| |||||||| || || || || Sbjct 723939 TACCGGCAAAAATAAGCCGTTGCTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAG 723880 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || ||| | || ||||| || || | || || |||||||| | ||||| || |||| Sbjct 723879 TCTTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTA 723820 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || ||||| Sbjct 723819 AAGTTTTTACGAAAATTTGCAT 723798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396255686188971