Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3059 111 1e-19 seq4548 89.7 4e-13 seq4 86.0 5e-12 >seq3059 Length=2231 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| ||||| || ||||||||||| ||| ||| | || || Sbjct 1638 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 1579 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676 | ||| || || ||||| |||| || ||||| || | ||||| | |||||||| || Sbjct 1578 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATC-CCCTCCTTATCTTG 1520 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| ||| ||| | | || || || | || || || | ||||| ||||| Sbjct 1519 AATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTT 1460 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||||||||||| || ||||||||||| Sbjct 1459 TCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| ||||| || ||||||||||| ||| ||| | || || Sbjct 1410 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 1351 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676 | || || || ||||| || | || |||||||| | ||||| | |||||||| || Sbjct 1350 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATC-CCCTCCTTATCTTG 1292 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| ||| ||| | | || || || | || || || | ||||| ||||| Sbjct 1291 AATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTT 1232 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||||||||||| || ||||||||||| Sbjct 1231 TCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| ||||| || ||||||||||| ||| ||| | || || Sbjct 270 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 211 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || ||||| || | || ||||| || | |||| || || ||||| | Sbjct 210 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGA 151 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | || || || | || ||||| | ||||| || ||| Sbjct 150 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGTAATGGTCTTT 91 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || || || |||||||| Sbjct 90 CCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| ||||||||||| ||||| || ||| ||| | || || Sbjct 1182 ACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCTTCA 1123 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTGTCGCT 48676 | || || || ||||| |||| || ||||| || |||||| | || |||||||| Sbjct 1122 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATC-CCTTCCTTGTCTTG 1064 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| || || ||| | | | | || || | || ||||| | ||||| || || Sbjct 1063 AATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTCTT 1004 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || ||||| || || || |||||||| Sbjct 1003 TCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 >seq4548 Length=666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| ||||| || ||||||||||| ||| ||| | || || Sbjct 665 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 606 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || ||||| |||| || ||||| || | |||| || || ||||| Sbjct 605 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 546 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || || | | | || || | || ||||| | ||||| |||||| Sbjct 545 ATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 486 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 485 CCAGTCAAGGTCTTAACAAAGATCTGCAT 457 >seq4 Length=926804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| ||||| || ||||||||||| ||| ||| | || || Sbjct 390710 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 390651 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || ||||| || | || |||||||| | || | || || || || | Sbjct 390650 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGA 390591 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || | ||| ||||| | || || ||||| Sbjct 390590 ATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 390531 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || |||||||| || |||||||| ||||| || Sbjct 390530 CCTGTCAAAGTCTTAACAAAAATTTGCATGGT 390499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380915765490069