Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq5 102 2e-16 >seq5 Length=897882 Score = 102 bits (112), Expect = 2e-16 Identities = 173/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 133938 TAACTGCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTCATTGCTTTA 133997 || |||| |||||| ||| || | | ||||| |||||| ||||||||| | || Sbjct 895363 TATCTGCTTGGAATCCATCTGATCTTGGTGAAATGGTTTTGCCTCCATGTCATA-CACTA 895421 Query 133998 GT-CAATTCTTCGTAAATGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTGTGAT 134056 || ||||| | || | || || ||||| ||| | |||||||| ||| ||||| Sbjct 895422 GTTCAATTTTATGTTCAAGATGGGGAGTTAAGTTGTCACTTGTATCAACGCAGCGGTGAT 895481 Query 134057 CTATTCTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCA 134116 | || ||||| ||||| ||||||||||| || ||| | | ||||||||| | ||| Sbjct 895482 GTTGGTTTGGGAGTTCCATTTAACATTGCTTCGTACTCACTTTTGACTCATATGATTGCA 895541 Query 134117 CAAGTTTGTGGGTTAGAAGTTGGTGAGTTTGTATGGATGGGTGGAGATGTTCACATTTAT 134176 || ||||||| || | |||||| ||||| | ||| |||| ||| |||||| Sbjct 895542 AAAATTTGTGGAATAACAACTGGTGATTTTGTTCACACTATTGGCGATGCTCATATTTAT 895601 Query 134177 AAAAATCA 134184 ||||| || Sbjct 895602 AAAAACCA 895609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147521249430094