Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq21 116 7e-21 >seq21 Length=323752 Score = 116 bits (128), Expect = 7e-21 Identities = 236/348 (68%), Gaps = 2/348 (1%) Strand=Plus/Plus Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 || |||||||| || || || || || ||||||||||| || || || || || || || Sbjct 30627 TTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAGAATATTCCTTCAACAGCTGCAAAA 30686 Query 48272 GCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCT 48331 || | | | ||||| |||| |||||| ||||| | ||||| || ||||| || Sbjct 30687 GCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTCGGCAATCCATCTTAGAGCCCAATCA 30746 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCA-CC 48390 || ||||| ||||| | || | || | || |||||| || || | |||| || Sbjct 30747 GCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCGTTGAAGAGTTTATTTCTCTCATCC 30806 Query 48391 TGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTAT 48450 || || || ||||| | || || | |||||||||| || | ||| || || Sbjct 30807 TG-ATCACGAATGTAGGTTTCAATAAGTTTCGAGTACATCTCACTATGAATATTTTCCAT 30865 Query 48451 AGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCT 48510 || || || || || ||||| | ||||| ||||| ||||| | || ||||| Sbjct 30866 GGCAATTTGAAAACCATAGAAAAAGCGTGCCTCGGGGACCTGGACTTCCTTTGAAAATCT 30925 Query 48511 CTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGC 48558 || | | |||||| || || || ||||| || |||||||||||||| Sbjct 30926 TTCAACTAAATTCTCGTTAACGATACCATCCGATGCAGCAAAGAAGGC 30973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931478037515520