Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 >seq5 Length=897882 Score = 143 bits (158), Expect = 2e-29 Identities = 222/315 (70%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 78364 TATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTC 78423 |||| || || ||||||||||| || || || ||||||| || || || | | || Sbjct 895611 TATGGTTTTTATAAATATGAGCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTATTC 895552 Query 78424 CGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTC 78483 | || | | ||||| ||||| || | | || ||| ||||||||||||||||||| || Sbjct 895551 CACAAATTTTTGCAATCATATGAGTCAAAAGTGAGTACGAAGCAATGTTAAATGGAACTC 895492 Query 78484 CTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGATA 78543 | || || |||||||| ||||| ||||| || ||||||| || ||||| ||| | Sbjct 895491 CCAAACCAACATCACCGCTGCGTTGATACAAGTGACAACTTAACTCCCCATC--TTGA-A 895435 Query 78544 CGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGAT 78603 | ||||| || | ||| || ||||| || || | |||| ||| | | |||| |||| Sbjct 895434 CATAAAATTGAACTAGTGTATGACATGGAGGCAAAACCATTTCACCAAGATCAGATGGAT 895375 Query 78604 TCCAAGCAGACACAATATGTCTGCGTCCGTAAGGGTCTTTCATAATAGATTCTATTACAT 78663 |||||||||| | ||| ||| | | |||||| ||| | || || || |||| Sbjct 895374 TCCAAGCAGATAAGATAATTCTTCTTGAAGAAGGGTTGTTCTTTATTTGGTCAATAACAT 895315 Query 78664 TAGCTATTTGGTCAA 78678 | |||| ||| |||| Sbjct 895314 TTGCTAGTTGATCAA 895300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300142795485400