Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1 145 4e-30 seq64 93.3 2e-14 >seq1 Length=1686976 Score = 145 bits (160), Expect = 4e-30 Identities = 184/248 (74%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||||||||||||||||| ||| | | | ||||||||||| | ||||| ||||||| Sbjct 915855 CATAAATAAATCTGGAACCCAAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGG 915914 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCATGGTTCTAAA 26050 ||| ||| |||||||||| || |||||| | | |||||||| ||||||||||| ||| Sbjct 915915 TCCTGTG-TTCTTTTTTAACTC-AAGAAATTGGATAATATCTGCATGCCATGGTTCCAAA 915972 Query 26051 TAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110 || |||||||| ||| |||||| ||||||||||| || || | |||| | Sbjct 915973 TATATAGCAAATGCACCAGGTCTTTTATTGCCACCTTGATCAACATAACGAACAGTACTA 916032 Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTG 26170 ||| |||| ||||||||||| || ||| ||||| |||| || || | | ||| Sbjct 916033 TTGTAAACACGTAACATTGGAACCAAACCATTTGAAGATCCATTAGTTCCAGAAATAAAT 916092 Query 26171 GATCCTGT 26178 |||||||| Sbjct 916093 GATCCTGT 916100 Score = 116 bits (128), Expect = 2e-21 Identities = 317/473 (67%), Gaps = 12/473 (3%) Strand=Plus/Plus Query 24684 CTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAA 24743 |||| ||||||||||| | |||||||||||| |||||||| || |||||||| |||| Sbjct 914630 CTGCCGGTTTAGTTCTTAAATAATACATTCCTGTTTTCAAACCATTTTTCCAACCATAAA 914689 Query 24744 AATGCATTGATGTTAGTTTTGCA-ATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGA 24802 |||||||||| | | || || | ||| | ||| || | | || | |||||| Sbjct 914690 AATGCATTGAACTACATATTCCATAAGTTGGTCTATT-TACATGAAGATTAAGTGATTGA 914748 Query 24803 GCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCG-TTTTCATCGATAT 24861 | ||| |||||| | | ||| || | ||||| || | |||| | || || Sbjct 914749 GATTGATCAACAAAGGGACCACGATCAATTGCCATTTCAATAATAGCTTTTTGTGGA-AT 914807 Query 24862 ATCGTAAGCTGTTTTGT--ATCTCTCTTTTATCTCAGTTGGAATACTTGCA-ATATTTTG 24918 || || | ||||| | | ||||| ||| | | ||||||| | ||| |||||||| Sbjct 914808 TTCCCAAACAGTTTTATAAAGTTCTCTGATATGTAA--TGGAATA-TCGCATATATTTTG 914864 Query 24919 AACTGATCCATTTTCTCTCAATAGATTCAATCTCATATTCGGTG-TCCAAAGATTAATTT 24977 || || ||||| | | ||||| || | | | ||| | |||||| | || Sbjct 914865 AATAGACCCATTAT-TTTCAATTATTTGATTAAGAATTTCCTCGTTCCAAATACCAAGGG 914923 Query 24978 TTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTC 25037 | | ||||| | | || |||||| || ||| || ||||| ||||| | || Sbjct 914924 TAATTAAATCTCGTAGGAGATGAGTATTTACAATTTGAAAATCACCAGATAAAACCCGTC 914983 Query 25038 TTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAG 25097 || | |||| ||||| ||| ||||||||| | |||||||| | || | || ||||| | Sbjct 914984 TTGTATATAAATTTGATGTGTATGGTTCAATAGATTCATTACTGCCAAGAATCTGAGATG 915043 Query 25098 TAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTA 25150 |||| || || |||||||| | || ||| | ||||| | | ||| ||||| Sbjct 915044 TAGAAGCAGTGGGCATTAAAGATACTAACAATGAATTACGAATGCCAAATTTA 915096 >seq64 Length=153875 Score = 93.3 bits (102), Expect = 2e-14 Identities = 182/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 26087 TGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAA 26146 || || ||||| | ||| || | ||| ||||| |||||||||||| |||||| |||| Sbjct 122553 TGGTCGACGTAACGTGCTGTATTATTAAAAACCCTCAACATTGGAATCAATCCATTTGAT 122494 Query 26147 AATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCG 26206 || ||||| | | ||| || || | | ||||||| |||| ||| | || Sbjct 122493 GTCCCATTTGTCCCACCAATAAATGAACCATTAGCTCTAATACAGTGAACATTTAAGCCA 122434 Query 26207 ATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTT 26266 || ||||| || |||| || || || || | || ||| ||| |||| |||| | Sbjct 122433 ATACCACCTGCAGATTTCGAGATCAAAGCGCATTGCTTAAGTGTGTCGTAAATCCCTTCT 122374 Query 26267 ATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCT 26326 || |||||| |||| |||||| ||||| || || || || | | | | ||||| Sbjct 122373 ATTGAATCACCAGCCATTGTTAATAAGAAACATGAGGACAACTGAGGACGCCTAGTTCCC 122314 Query 26327 GAATTAAATAATGTCGGTGTAGCATGAGT 26355 | || ||||| || || | ||||||||| Sbjct 122313 GCGTTGAATAAAGTTGGAGAAGCATGAGT 122285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253025496300725