Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq16 206 3e-48 >seq16 Length=461423 Score = 206 bits (228), Expect = 3e-48 Identities = 475/711 (67%), Gaps = 6/711 (1%) Strand=Plus/Plus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 ||||| | ||||| || |||||||||||||| | || ||||| |||||||| || Sbjct 56524 AATGGAGCAAGATGGCTTTTAACACCAATAGGACCCATTCCTGGACCACCACCTCCGTGC 56583 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 |||||||||||||||||||| | ||| | ||| ||||||| ||||||||| | |||| Sbjct 56584 GGAATACAGAATGTCTTATGAAGATTCAAATGTGATACATCACTACCATAGTCCCCTGGT 56643 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 | || |||||||||||||| | ||| || || || ||||| || || || ||||| Sbjct 56644 CTACATAATCCTACCTGTGCATTAAAATTGGCTCCGTCAAGATAAACTTGTCCTCCATTT 56703 Query 138342 TCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGA 138401 ||||| || | ||||| | | ||||||| ||||||| |||||||| || |||||| Sbjct 56704 TCATGGACTTTATTACAAACATCAATGATGTTACTTTCAAACACACCATGTGTAGATGGA 56763 Query 138402 TATGTAATCATAATA-CATGAGAGTTCA--AATGTATTCATGATTGCTTTCTTCTCTAGA 138458 || || | ||| ||| || | || ||| | |||| | ||| ||| ||| Sbjct 56764 TAAGTTACCATTATAGCACCA-AGATCACTACCATATT--TTTCTGCCTTCAAAGAAAGA 56820 Query 138459 TCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCC 138518 |||||| | |||||| || | | ||| | | ||| || ||||| | ||| Sbjct 56821 TCTTTGTAATTTATGTTACCGTGTTTGTCAGAATCTACAGGAACGACTTTAAAGTTAGCC 56880 Query 138519 ATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTT 138578 || |||| |||||| || |||||||| ||||| ||| || ||||| | ||||| Sbjct 56881 ATTGATGCAGAAGCAGGGTTTGTTCCATGAGCTGATGTTGGAATGAGACAAATTTTTCTA 56940 Query 138579 TTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCC 138638 || || | ||| || | | || | | || ||||| | || ||||| ||||| Sbjct 56941 TTCTCTTGTCCAATAGATTTAAGGTAACCCTTAATAGCTAATAAACCAGCATATTCACCA 57000 Query 138639 TGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCAT 138698 | | ||| || ||||| | || | ||| |||| || | ||||| | |||| Sbjct 57001 TTAGCTCCACTATTTGGTTGGAGAGAAAAGTTGTCATAACCAGTAACTTCACAAAGCCAT 57060 Query 138699 TTCTGTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGA 138758 || | | |||| | || ||||||||||| | | || || ||| | |||| Sbjct 57061 TTTTCAAGATCATTGAAAATTTTTTGATAACCATTAGCTTGCTCAATTGGTACAAATGGA 57120 Query 138759 TGCACGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTC 138818 || | || | ||| | ||||| | || | || |||||||| ||||| | |||| Sbjct 57121 TGTATATTTGATAATGTTGGCCATGTTAAGGGTAACATCTCTGCTGCGGCATTCAATTTC 57180 Query 138819 ATTGTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTA 138869 || || || || | |||| |||| || || | ||| ||||| ||| Sbjct 57181 ATAGTACATGACCCTAAGGGAATCATAGAATGAACAAGTGACAAATCCTTA 57231 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 139238 AATTCTTCTTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGA 139297 |||| | |||||||| || |||| | || | |||||||| ||||||| | | ||| Sbjct 57627 AATTTTCCTTGCTATTGCTTGTAAACGATTAGGTCCATGATAAACTGCATACATTGCAGC 57686 Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357 | ||||| | | |||||||||||| ||||| || || ||||| || | |||||| Sbjct 57687 AAGGTTTGCTGGTAATGCTTGTGCTGTACAGATATTTGATGTAGCTTTATCACGTCTAAT 57746 Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAATC 139386 ||| || ||||| ||||| || ||||||| Sbjct 57747 ATGTTGTTCTCTTGTTTGAAGAGCTAATC 57775 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 139851 GCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATT 139910 ||||| ||| ||||||| ||||| ||||| || | || ||| |||||||||||| Sbjct 58243 GCTAAGGCCATAGCCTCTGAACACGCAGTAGCTTCGTCAAGTAAAGAAGCGTTTGCTATT 58302 Query 139911 GGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCC 139970 | || || | || ||||| | ||||| |||| | || | |||| | ||||||| Sbjct 58303 TCAAGGCCAGTTAAATCAGTGATCATGGTTTGAAAATTTAGTAGACCTTCAAGTCTTCCC 58362 Query 139971 TGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACG 140030 || |||| || | |||||| ||||| || | ||| ||||| || ||||| ||| | Sbjct 58363 TGTGATAGTTCCGGTTGATATGGAGTATATGGTGTTGTCCAACCAGCATTCTGAAGCATA 58422 Query 140031 TTTC 140034 |||| Sbjct 58423 TTTC 58426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578964362131560