Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq21 266 4e-66 >seq21 Length=323752 Score = 266 bits (294), Expect = 4e-66 Identities = 520/769 (68%), Gaps = 37/769 (5%) Strand=Plus/Minus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 || ||||| ||||||||||| ||||| ||||| || |||||||| ||| ||||||||| Sbjct 162821 TTACCTGTAGCAATAACAAAGTCATCTGGTTCATCGTGTTGAAGAATTCTCCACATAGCT 162762 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAA 47904 || ||||| ||| | ||||| ||||| ||||| ||||| | ||| || || |||| Sbjct 162761 TCAACATACTCTTTTGCATGACCCCAATCACGTTTAGCATCCAAATTACCAAGTAATAAT 162702 Query 47905 CAGTCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAA 47964 ||||| |||| | ||| || || |||||||| || | |||||||| Sbjct 162701 GTTTCTTGAACACCTATACTAATTTTAGCTACAGCCCTTGTAATTTTTCTTGTTACAAAG 162642 Query 47965 GTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCG 48024 | | ||| | |||||| |||||||||||||| | ||||||| | || ||| | ||||| Sbjct 162641 TTATTACCTCTTCTTGGTGATTCATGATTAAATAAAATACCATTGCAAGCAAATATTCCA 162582 Query 48025 TATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGA 48084 |||| ||||||||| || || | |||||| || | || | |||||| || |||| ||| Sbjct 162581 TATGCTTCACGATAATTTTTAATTATCCAATAAGCGTACAATTTTGCTACTGCATATGGA 162522 Query 48085 GAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGT 48144 |||||||| || ||||| |||||| | || || | ||||| || || ||||||||| Sbjct 162521 CTTCGTGGATAAAATGGTGTTGTCTCTTTTTGGGGGATTTCTTGGACTTTTCCATAAAGT 162462 Query 48145 TCACTGGTGGATGCTTGATAGATACGAACCCTATCTT--CCATCTCAAGCAAACGGACTG 48202 || ||| || ||||| || | | || | | || || ||||| | | | Sbjct 162461 TCTGAGGTAGAAGCTTGGTAAAATCTGACTTTGTGTTGGAGATTACAAGCTA--CTATAG 162404 Query 48203 CCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAA 48262 | || || | ||| | || || | |||||| || | ||||| || || | |||| Sbjct 162403 CATCGAGAAGTCTTAATGTACCAACTGCATCTACCTCTGCTGTATATTCAGGTAAATCAA 162344 Query 48263 ACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCT 48322 | ||| || |||||||| ||||| |||||| ||||| ||| |||||||| | | Sbjct 162343 AACTAACTTTAACATGACTTTGTGCTGCAAGATGGTAAATTTCAGTTGGTTGAA-TTTTT 162285 Query 48323 GA-ATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAAT--- 48378 || || | | | | | || || || || | || |||||||| | || ||| Sbjct 162284 GACATCAATTTAATGAGACATGATGAATCAGTCATATCACCATAATGAAGTTGAAATGTT 162225 Query 48379 --TGATC------------------------ATAAATGTGATCAATTCTATGTGTATTAA 48412 ||||| ||||||||| |||| | ||| ||||||| Sbjct 162224 GATGATCCTTTATGTATATTAGGATCAGCATATAAATGTG--CAATACGATGAGTATTAA 162167 Query 48413 TTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGAAGTTCTG 48472 | || | | |||| ||||||||| || ||||| || | | ||| | ||||| Sbjct 162166 ATGTTGACGATCTGCGGATAATACCATGTACAGAGTACCCTTTAGCTATAAGTAATTCTG 162107 Query 48473 CTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTT 48521 | || || ||||||||||| || ||||||||||| || | ||||||||| Sbjct 162106 CCAAATAAGAACCATCTTGACCAGTAATACCAGTAATGATAGCAACTTT 162058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665455277247960