Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 >seq1 Length=1686976 Score = 136 bits (150), Expect = 5e-27 Identities = 355/540 (66%), Gaps = 6/540 (1%) Strand=Plus/Minus Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 |||| |||| ||||| || | ||||||||||||||||||||| ||||||| || | Sbjct 915688 AATCTCAGATAGAGACGGGTATTCCATATATGCTTTACAAGGATCATTGTAACCGTAAAA 915629 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 |||| ||| | ||||| |||||||| || | ||||||||||| | |||||| | | | Sbjct 915628 GTAATCAACAAAATTTAGGAACAATAAAATGTTCAAATCTTTGTGCTGAAATTGTTCAAT 915569 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 | |||| |||||||| ||||||| || || || ||| || | || Sbjct 915568 TTTCTTCCCCTAATGAAGTTGCTGTTTGTAATTTGGGGTCTATTGCACTTAATAATTTTG 915509 Query 76074 TC---AATGAAGAG---ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGA 76127 || | | ||||| | || |||||||| | || |||||| | || |||| | Sbjct 915508 TCGTGATTAAAGAGAAAAAACGTGTTTTTGATTTTAAACGTCTTCATAACATGGCAAAAA 915449 Query 76128 TTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGC 76187 || | || || ||| | ||| || ||||| | ||| |||||| | ||| || | Sbjct 915448 TTTTGACAAAGAATTTGAACAAGGTTATTGATATTAATCATTATCCACTGGAGGAGGCAC 915389 Query 76188 GAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTAT 76247 | || |||| ||| | |||||||| | || || ||||| || || |||| || Sbjct 915388 GTTTATCAAATACTAAACATCGTCCTATTGGAATTGGAGTACAAGGACTTGCAGATGCAT 915329 Query 76248 TTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCT 76307 || | | || ||||| ||| ||||| | || | ||| |||| Sbjct 915328 TTTTACTCATGAAATATCCATTTACATCACCAGAAGCTAGAGATCTCAATAAGAAAATCT 915269 Query 76308 TTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTT 76367 ||||||| || ||||| | | || ||||| |||||||| || | || || | Sbjct 915268 TTGAAACTATTTATCATGGTGCACTTGAGGCTTCCTGTGAATTAGCAAAGATTCATGGAT 915209 Query 76368 CCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 ||||||| |||||||| || || || | || |||| | ||||||| ||| ||||||| Sbjct 915208 CCTATGAAACATTTGATGGATCACCTGTATCTAAAGGAATTCTTCAGTATGACATGTGGG 915149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596534529164640