Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4 145 1e-29 seq3059 131 3e-25 seq38 116 7e-21 seq4548 114 2e-20 seq5 100 5e-16 >seq4 Length=926804 Score = 145 bits (160), Expect = 1e-29 Identities = 184/250 (74%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | || | ||| || || || || || || | ||||| | Sbjct 390716 CGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCA 390657 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| |||||||||||||| |||||||| || || |||||||||||| Sbjct 390656 TCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTA 390597 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||| ||||| |||| ||| || || ||||| || Sbjct 390596 TCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATG 390537 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TTTA----TTAGTAAAATAATTAT 193380 ||||| ||||| | || || ||||| |||||||| ||| ||||||| ||| || Sbjct 390536 GTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCATGGTTAAAGTTTAGTAATATACAAAT 390477 Query 193381 T-TTAAATAA 193389 | | |||||| Sbjct 390476 TCTGAAATAA 390467 >seq3059 Length=2231 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | || | ||| || || || || || || | ||||| | Sbjct 1416 CGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCA 1357 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| |||||||||||||| |||||||| || || || || || ||| Sbjct 1356 TCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTA 1297 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||| | ||| |||||| ||||||| || ||||| ||||| || Sbjct 1296 TCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATG 1237 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | ||||| || || || ||||| Sbjct 1236 GTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||| | || | |||||| || || ||||| || | ||||| | Sbjct 504 CGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTCTTCCA 445 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| ||||| |||||||| |||||||| || || || || || ||| Sbjct 444 TCTTCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTA 385 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||| | ||| ||| || || |||| || || || ||||| ||| Sbjct 384 TCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATA 325 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || |||||||||||||| Sbjct 324 GTTTTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || || |||| ||| | || | ||| || || || Sbjct 297 ATTTGCATACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTG 238 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | ||||| ||| || | ||||||||| |||||||||||||| ||||| Sbjct 237 TAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGG 178 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| ||||| || |||| ||| | ||| |||||| |||||| Sbjct 177 TCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAA 118 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || ||||| || || || || |||| || || || || || ||||| Sbjct 117 GGTTCTACCTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 >seq38 Length=203164 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| | | ||||| || || || ||||||||||| ||||| ||||||| | Sbjct 170979 CCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGCT 170920 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| |||| || ||||| || | ||| ||||| ||||| ||||| ||||| || || Sbjct 170919 TTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAAGA 170860 Query 193341 GTTTTTACAAATATTTGCATTT 193362 || || || || |||||||||| Sbjct 170859 GTCTTAACGAAAATTTGCATTT 170838 >seq4548 Length=666 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || | ||||| ||| || | ||||||||| || ||||| ||||| Sbjct 183 AATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCT 124 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||| || || || ||||||||||| ||||| || || | || | || ||| || Sbjct 123 TTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTATCAATGGT 64 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| || ||||| ||||| || || || || |||| ||||| ||||| || || Sbjct 63 ATCAGAAGGTTCCACTTCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAGATCTG 4 Query 193358 CAT 193360 ||| Sbjct 3 CAT 1 >seq5 Length=897882 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| | | || || || || || || |||||||| || || || || || Sbjct 723937 CCGGCAAAAATAAGCCGTTGCTGGTCTGGTGGAATACCTTCTTTTTCATGGATCTTAGTC 723878 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || ||||||||| | |||||| || |||||||| ||||| || |||| Sbjct 723877 TTAACATTATCAACAGTATCGGAGGCCTCAACCTCAAGAGTTATTGTTTTTCCAGTTAAA 723818 Query 193341 GTTTTTACAAATATTTGCAT 193360 |||||||| || |||||||| Sbjct 723817 GTTTTTACGAAAATTTGCAT 723798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899601511566960