Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4548 141 1e-28 seq3059 138 2e-27 seq4 132 7e-26 seq21 131 2e-25 seq1 91.5 2e-13 >seq4548 Length=666 Score = 141 bits (156), Expect = 1e-28 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || |||||||||||||||||||| | || || ||| |||| Sbjct 457 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 516 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| |||||||| || || ||||| ||| Sbjct 517 GACACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 576 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || ||||| || ||| |||||| | || ||||| | Sbjct 577 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACA-- 634 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || |||||||| || Sbjct 635 ACATCCAAAAGGAGTCAACTCTTCATTTGGT 665 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || ||||||||||||||||| || | || || || |||| Sbjct 229 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAAACTATCACTCTTGAGGTAGAGCCTTCT 288 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| ||||| || || || ||||| ||| Sbjct 289 GACACCATTGATAACGTTAAGTCAAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAA 348 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || || || || ||||| ||| |||||| | || || || || Sbjct 349 CAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAAC 408 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 409 ATCCAGAAAGAGTCAACCCTTCACTTGGT 437 Score = 118 bits (130), Expect = 2e-21 Identities = 141/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| || |||||||| || || || | ||||| ||| |||| Sbjct 1 ATGCAGATCTTTGTTAAAACTTTAACTGGAAAGACCATCACTCTTGAAGTGGAACCTTCT 60 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || ||||| |||||||| || || ||||| ||| Sbjct 61 GATACCATTGATAACGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 120 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || || || || ||||| ||| |||||| | || || || || Sbjct 121 CAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAAC 180 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 181 AT-TCAAAAG 189 >seq3059 Length=2231 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || |||||||||||||||||||| | || || ||| |||| Sbjct 518 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 577 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| |||||||| || || ||||| ||| Sbjct 578 GACACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 637 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || ||||| || ||| |||||| | || || || || Sbjct 638 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAAC 697 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || |||||||| || Sbjct 698 ATCCAGAAAGAGTCAACCCTTCATTTGGT 726 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || |||||||||||||||||||| | || || ||| |||| Sbjct 290 ATGCAAATATTTGTCAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 349 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || |||||||| || || || || ||||| ||| Sbjct 350 GACACCATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAA 409 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | ||| || ||||| || |||||| |||||| | || || || || Sbjct 410 CAAAGATTAATCTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTCTCTGACTACAAC 469 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || |||||||| || Sbjct 470 ATCCAGAAAGAGTCAACCCTTCATTTGGT 498 Score = 132 bits (146), Expect = 7e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || |||||||||||||||||||| | || || ||| |||| Sbjct 746 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 805 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| |||||||| || || ||||| ||| Sbjct 806 GACACCATTGACAACGTTAAGTCAAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 865 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | ||| || || ||||| || ||| |||||| | || || || || Sbjct 866 CAAAGATTAATCTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAAC 925 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || ||||||||||| Sbjct 926 AT-TCAAAAGGAGTCAACCCTTCATTTAGT 954 Score = 132 bits (146), Expect = 7e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||||||||| ||||| | ||||| ||| ||| Sbjct 1430 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1489 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || |||||||| || || || || ||||| ||| Sbjct 1490 GACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAA 1549 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || ||||| || ||| |||||| | || ||||| | Sbjct 1550 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACA-- 1607 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || |||||||| || Sbjct 1608 ACATCCAAAAGGAGTCAACTCTTCATTTGGT 1638 Score = 127 bits (140), Expect = 3e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||||||||| ||||| | ||||| ||| ||| Sbjct 1202 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1261 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || |||||||| || || || || ||||| ||| Sbjct 1262 GACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAA 1321 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || || |||||| |||||| | || ||||| | Sbjct 1322 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA-- 1379 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || |||||||| || Sbjct 1380 ACATCCAAAAGGAGTCAACTCTTCATTTGGT 1410 Score = 120 bits (132), Expect = 4e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || |||||||| || ||||| | || || ||| |||| Sbjct 974 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCT 1033 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || ||||| ||||| || ||||| || || ||||| ||| Sbjct 1034 GACACCATCGATAATGTCAAGTCGAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAA 1093 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || || || |||||| |||||| | || ||||||||| Sbjct 1094 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCCGATTATAAT 1153 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || |||||||| || Sbjct 1154 AT-TCAAAAGGAGTCAACTCTTCATTTGGT 1182 Score = 114 bits (126), Expect = 2e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || |||||||| || ||||| | || || ||| ||| Sbjct 62 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCC 121 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || ||||| |||||||| || || ||||| ||| Sbjct 122 GACACTATTGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 181 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || || |||||| |||||| | || ||||| | Sbjct 182 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA-- 239 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || |||||||| || Sbjct 240 ACATCCAAAAGGAGTCAACCCTTCATTTGGT 270 >seq4 Length=926804 Score = 132 bits (146), Expect = 7e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || ||||| || ||||| || || | || || || |||| Sbjct 390502 ATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 390561 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||| || |||||||||||||| || || ||||| ||| Sbjct 390562 GATACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAA 390621 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || || |||||| |||||| | || ||||| | Sbjct 390622 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACA-- 390679 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || |||||||| || Sbjct 390680 ACATCCAAAAGGAGTCAACCCTTCATTTGGT 390710 >seq21 Length=323752 Score = 131 bits (144), Expect = 2e-25 Identities = 468/717 (65%), Gaps = 27/717 (4%) Strand=Plus/Plus Query 17863 TTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATA--TT 17920 ||| | |||||| ||||| ||||| |||||||| || || ||||| | ||| | || Sbjct 30254 TTTCTGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTCAATTGAGAGATT 30313 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 || ||||||||||||||| || | || |||||| |||| ||||| | || Sbjct 30314 AAC--CATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACA-ATTAAGTTCTAC 30370 Query 17981 -AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 |||| ||| || ||| | |||| ||| | |||| ||| | ||||||| || | Sbjct 30371 CAATAGATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATTCCGAT 30430 Query 18040 TAGTCTGAA-AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 | | | || ||| ||||||||| ||| | |||| || || || ||| | ||| | | Sbjct 30431 CA-TATCAACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCATCTCTAA 30489 Query 18099 TTATGT---TTAT---TACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATA 18152 |||| | |||| | | |||| ||| || || | || | | || ||| Sbjct 30490 TTATTTCCTTTATACGTTCTTCAGAT---GGC---TTGTTCTCCAAGTAACTGTAC-ATA 30542 Query 18153 ATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACG 18212 | | || ||||||||| |||||| || ||||||| ||| || || || || | | Sbjct 30543 AGA--CATGCAAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTG 30600 Query 18213 TTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAA 18272 ||||||||||||| | || | ||| || ||||| ||||| | || || || ||| | Sbjct 30601 TTAACCCGGGCATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGA 30660 Query 18273 AGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGC 18332 ||||||| || ||||| || || || |||| | ||| ||||| | || ||| Sbjct 30661 AGAATATTCCTTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTG- 30719 Query 18333 TCAG-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTC-TCTAT 18390 || | |||||| || | ||||| || ||| || | || | | || || | Sbjct 30720 TCGGCAATCCATCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGG-AAATTCATCCAA 30778 Query 18391 AGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGA 18450 ||| || || | | || | | || | ||| || || || || || | || Sbjct 30779 AGCGTTGAAGAGTTTATTTCTCTCATCCTGATCACGAATGTAGGTTTCAATAAGTTTCGA 30838 Query 18451 ATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC 18510 ||||| ||| ||| || ||||||| || || ||||||| ||| || | | ||||| Sbjct 30839 GTACATCTCACTATGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTC 30898 Query 18511 GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567 ||| || | || | |||||||||| || |||||||| ||||| ||||| || Sbjct 30899 GGGGACCTGGACTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATC 30955 >seq1 Length=1686976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 296/449 (66%), Gaps = 18/449 (4%) Strand=Plus/Minus Query 25990 CATATATAGAAGAAATATTTG-TGAGAAAGGAATTAGCCGATAATTTTTGCTATTATAAT 26048 ||| | || | |||||||| | | ||||| ||| || || ||| |||||| || | Sbjct 154880 CATTTTTAAATGAAATATTCGCTTGGAAAGAGATT-GCAGAACATTACTGCTATCATGAG 154822 Query 26049 AAAAATTA---TAAATCAATAGAATCTTGTCCTAATTGGGCAATTACTACTTTAGATTTA 26105 |||||||| ||| | | | ||| ||| ||||||| |||||| | | Sbjct 154821 AAAAATTACGATAATTTAGATGGTGCTTTACCT---TGGGCAAAAGAAACTTTACTTAAA 154765 Query 26106 Cataaaaatgatgaaagaaataaatttt-ttaatataaaagatttagaatatggaaaaac 26164 ||||| |||||| ||||| || || | | || || | | ||||||||| ||| ||||| Sbjct 154764 CATAAGAATGATAAAAGAGATGAAGTATATTCATCTGAG-GATTTAGAAGCTGGCAAAAC 154706 Query 26165 agataataAATTATGGAATTATTGTCAATATTATTTATTGAAATTTGGATATTTAAACGG 26224 | | || | | |||||| | |||| | | |||||| | ||| | | | || Sbjct 154705 AAAAGATCCACTTTGGAATGCTGCTCAAAAAGAGCTATTGACAAAAGGAAAAATTCATGG 154646 Query 26225 TTATTTGAGAATGTTCTGGGCTAAAAAATTATTAGAATGGACAAAAGATCCACAAGACGC 26284 ||| | ||||||| |||||| ||| |||| || | |||| | ||||| |||| || Sbjct 154645 TTACGTCAGAATGTACTGGGCAAAACAATTGCTAAAGTGGAAGGATGATCCCGAAGATGC 154586 Query 26285 TATAGATAAATGC-ATATATTTGAATGACAAATATTTTTTCGATGGCTGCGATCCAATGG 26343 || || || | | || | || ||||| ||||||| | ||||| ||||||| | Sbjct 154585 -ATTGAAAATTACCATTGAATTAAATGATAAATATTCCATTGATGGTAATGATCCAAACG 154527 Query 26344 GATACGTAAATATATTATGGTGTATAGGAGGTT---TGCACGATAGAGCGTTCAAAGAAA 26400 |||| |||| | |||||||| | ||| || || | || || || |||| Sbjct 154526 GATATACTGCTATAATGTGGTGTATTTGTGGTGCCATGGACCAAGGA---TTTAAGGAAA 154470 Query 26401 GAAAAATATATGGGAAAATTAGATTTATG 26429 |||| ||| |||||||||||| |||| Sbjct 154469 GAAATATAGTAGGGAAAATTAGACCTATG 154441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731828975074800