Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3059 158 2e-33 seq4 154 3e-32 seq4548 140 6e-28 seq21 125 1e-23 seq38 93.3 8e-14 >seq3059 Length=2231 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | || ||||| | ||| | ||| || ||| || |||||| Sbjct 1431 ATACCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCA 1372 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| |||||||| |||||||| |||||||| ||| Sbjct 1371 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGT 1312 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| ||||| |||| || || | |||| Sbjct 1311 GGGATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCT 1252 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||||||||| ||||| || ||||| | || |||||||| Sbjct 1251 ACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | || ||||| | || | ||| || ||| || |||||| Sbjct 291 ATACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCA 232 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| |||||||| |||||||| ||||| || ||| Sbjct 231 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGT 172 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || ||| ||||| |||| || || | |||| Sbjct 171 GGAATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCT 112 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || |||||||| || || | || |||||||| Sbjct 111 ACCTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| | || ||||| | ||| | ||| || ||| || |||||||| Sbjct 1657 ACCTCCACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGA 1598 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | |||| || | ||||| |||||||| || ||||| ||||| || ||||| Sbjct 1597 GAGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGG 1538 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| || || ||| ||||| |||| || || | |||||| Sbjct 1537 GATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTAC 1478 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| |||||||||||||| ||||| || ||||| | || |||||||| Sbjct 1477 TTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 143 bits (158), Expect = 5e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | ||||| | || ||||| | ||| | ||| ||| || ||||||||||| Sbjct 1203 ATACCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGA-ATATTATAATC 1145 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | |||| | |||| || | |||||| |||||||| || ||||| ||||| || || Sbjct 1144 GGAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGG 1085 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| || ||||| ||||| || |||||| || | || || | ||| Sbjct 1084 TGGGATCCCTTCCTTGTCTTGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTC 1025 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || ||||||||||| || |||||||| || || | || |||||||| Sbjct 1024 TACCTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | || ||||| | || | |||||| ||| || || ||| Sbjct 519 ATACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCA 460 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | ||| || ||||||||||||||||| |||||||| ||| Sbjct 459 GAGAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGT 400 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| ||||| || | || || | |||| Sbjct 399 GGGATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCT 340 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| ||||| ||||| || || || | |||||| ||||| Sbjct 339 ACCTCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | ||||| | |||||||| | || | ||| ||| || || || || || Sbjct 975 ATACCTCCACGGAGACGGAGAACTAAATGAAGGGTTGACTCCTTTTGA-ATGTTGTAGTC 917 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | |||| | |||| || | ||||| ||||||||||||||||| ||||| || || Sbjct 916 AGAAAGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGG 857 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||| ||||| || || || || || || | || || | ||| Sbjct 856 TGGAATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTC 797 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || |||||||| ||||| ||||| || || |||| ||| |||||||| Sbjct 796 TACCTCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 746 >seq4 Length=926804 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| | || ||||| | || | ||| || ||| || |||||||| Sbjct 390729 ACCTCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGA 390670 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | |||| || | |||||| |||||||| |||||||| |||||||| ||||| Sbjct 390669 GAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGG 390610 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||||||||| || ||| ||| ||||| || | ||| || | ||||| Sbjct 390609 GATTCCTTCTTTATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTAC 390550 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||||| || || || || |||| ||| || ||||| Sbjct 390549 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq4548 Length=666 Score = 140 bits (154), Expect = 6e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | |||||| | || || || | ||| | || ||| || || || || || Sbjct 230 ATACCTCCACGAAGACGGAGAACCAAGTGGAGAGTTGATTCCTTTTGA-ATGTTGTAGTC 172 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | |||| | |||| || | |||||| ||||| || || ||||| ||||| || || Sbjct 171 AGAAAGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGG 112 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||||||||| ||||| || || || || ||| || | ||| || | ||| Sbjct 111 TGGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTC 52 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| ||||| || |||||||| ||||||| ||| |||||||| Sbjct 51 CACTTCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 >seq21 Length=323752 Score = 125 bits (138), Expect = 1e-23 Identities = 423/666 (64%), Gaps = 3/666 (0%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAATAA 49651 ||||||||||||||| || || ||||||||| |||| | | | | | |||| Sbjct 30317 CATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACCAATAG 30376 Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 |||||| ||| | || | ||| | ||||||| | ||||||| || | | | Sbjct 30377 ATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATTCCGATCATATC 30436 Query 49712 AAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcat 49771 || || | |||||| || | |||| ||||| || || || | | ||||||| Sbjct 30437 AACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCATCTCTAATTATTTC 30496 Query 49772 aattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCAAA 49831 ||||| | || ||| || | | | | | | || || | ||||||||| Sbjct 30497 CTTTATACGTTCTTCAGATGGCTTGTTCTCCAAGTAACTG---TACATAAGACATGCAAA 30553 Query 49832 ATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 49891 |||| ||||| ||||| || | || || || ||||| | ||||| || ||||| Sbjct 30554 ATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTGTTAACCCGGGCAT 30613 Query 49892 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 49951 || || | || |||||||| ||||| | ||||| || ||| |||||||| || || Sbjct 30614 CAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAGAATATTCCTTC 30673 Query 49952 GACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATT 50011 ||| ||||| || |||| | | ||||||| | || | || ||||| | Sbjct 30674 AACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTCGGCAATCCATCT 30733 Query 50012 TATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTC 50071 || ||||||||| ||||| ||| |||| |||| | | || | ||| || || | || Sbjct 30734 TAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCGTTGAAGAGTTT 30793 Query 50072 AtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAATG 50131 |||| | |||| || | | || ||||| ||| ||| Sbjct 30794 ATTTCTCTCATCCTGATCACGAATGTAGGTTTCAATAAGTTTCGAGTACATCTCACTATG 30853 Query 50132 TACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACTTC 50191 | | |||||| || |||||||| ||| || | ||| || | ||| ||||| Sbjct 30854 AATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTCGGGGACCTGGACTTC 30913 Query 50192 GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGC 50251 | |||| ||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 30914 CTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATCCGATGCAGCAAAGAAGGC 30973 Query 50252 TAAAAC 50257 ||| || Sbjct 30974 TAACAC 30979 >seq38 Length=203164 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || | | ||||| || ||||| ||||||||||| ||||| ||||| Sbjct 170981 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGG 170922 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| || | |||||| | || ||||| ||||| || || |||||||| | Sbjct 170921 CTTTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAA 170862 Query 192515 ATGTTTTAATAAATATCTGCATTT 192538 || |||| || || ||||||| Sbjct 170861 GAGTCTTAACGAAAATTTGCATTT 170838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984420678004050