Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3059 154 3e-32 seq4548 136 7e-27 seq4 136 7e-27 seq21 132 9e-26 seq38 111 3e-19 >seq3059 Length=2231 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || | || ||||| | ||| | ||| || |||||||||||| Sbjct 1203 ATACCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCG 1144 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| ||||||||||| ||||| |||||||| ||| Sbjct 1143 GAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGT 1084 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| || |||||| || || || || | |||| Sbjct 1083 GGGATCCCTTCCTTGTCTTGAATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCT 1024 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || |||||||| || || | ||| |||||||| Sbjct 1023 ACCTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 974 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || | || ||||| | || | ||| || || || ||||| Sbjct 291 ATACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCA 232 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| ||||||||||||||||| |||||||| ||| Sbjct 231 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGT 172 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || ||| ||||| ||||| || || | |||| Sbjct 171 GGAATTCCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCT 112 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || |||||||| || || | ||| |||||||| Sbjct 111 ACCTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || | || ||||| | ||| | ||| || || || ||||| Sbjct 1431 ATACCTCCACGGAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCA 1372 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| ||||||||||||||||| ||||| || ||| Sbjct 1371 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGT 1312 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || ||| ||||| ||||| || || | |||| Sbjct 1311 GGGATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCT 1252 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||||||||| ||||| || ||||| | ||| |||||||| Sbjct 1251 ACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| || | || ||||| | ||| | ||| || || || ||||| || Sbjct 1657 ACCTCCACGAAGACGAAGAACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGA 1598 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | | || || | ||||| ||||||||||| ||||| |||||||| ||||| Sbjct 1597 GAGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGG 1538 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || |||||||| || || ||| ||||| ||||| || || | |||||| Sbjct 1537 GATCCCCTCCTTATCTTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTAC 1478 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| |||||||||||||| ||||| || ||||| | ||| |||||||| Sbjct 1477 TTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || | || ||||| | || | |||||| || || || || Sbjct 747 ATACCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCA 688 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | ||||| ||||||||||| ||||| |||||||| ||| Sbjct 687 GAAAGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGT 628 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || || || || || || || || | |||| Sbjct 627 GGAATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCT 568 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||| ||||| || || |||| || |||||||| Sbjct 567 ACCTCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 518 >seq4548 Length=666 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || || || | ||| | || || ||| || || || Sbjct 230 ATACCTCCACGAAGACGGAGAACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCA 171 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| ||||| ||||| ||||| |||||||| ||| Sbjct 170 GAAAGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGT 111 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || || || ||| || ||||| || | ||| Sbjct 110 GGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCC 51 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || |||||||| ||||||| || |||||||| Sbjct 50 ACTTCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | ||| | ||| || || || ||||| || | || || | | || || Sbjct 665 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 606 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||||| ||||||||||| ||||| |||||||| ||||| || |||||||| ||||| Sbjct 605 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 546 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || || || || || || || | |||||| || |||||||| ||||| Sbjct 545 ATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 486 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || |||| || |||||||| Sbjct 485 CCAGTCAAGGTCTTAACAAAGATCTGCAT 457 >seq4 Length=926804 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| || | || ||||| | || | ||| || || || ||||| || Sbjct 390729 ACCTCCACGAAGACGAAGAACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGA 390670 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | | || || | |||||| ||||||||||||||||| ||||| || ||||| Sbjct 390669 GAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGG 390610 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||||||||| || ||| ||| ||||| || ||||| || | ||||| Sbjct 390609 GATTCCTTCTTTATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTAC 390550 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| |||||||| || || || || |||| || || ||||| Sbjct 390549 CTCAAGAGTGATGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq21 Length=323752 Score = 132 bits (146), Expect = 9e-26 Identities = 350/530 (66%), Gaps = 7/530 (1%) Strand=Plus/Plus Query 38819 CATCACATTGTATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTC 38878 ||| ||| | |||| ||||||||||| ||||| || || || || || ||||| ||||| Sbjct 30242 CATTACACCGAATTTCTGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTC 30301 Query 38879 TAATGATA--TTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCT 38936 | ||| | |||| ||||||||||||||| || || ||||||||| |||| | Sbjct 30302 AATTGAGAGATTAAC--CATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACAA 30359 Query 38937 ATCAATACATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAA 38996 | | | | |||| |||||| ||| | || | ||| | ||||||| | || Sbjct 30360 TTAAGTTCTACCAATAGATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAA 30419 Query 38997 TTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctaca 39056 ||||| || | | | || || | |||||| || | |||| ||||| || || Sbjct 30420 TTCATTCCGATCATATCAACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACG 30479 Query 39057 gcttgtttaattatcataattatattattttttgataatttatatttaatatgattcgca 39116 || | | ||||||| ||||| | || ||| || | | | | | | | | Sbjct 30480 GCATCTCTAATTATTTCCTTTATACGTTCTTCAGATGGCTTGTTCTCCAAGTAACT-GTA 30538 Query 39117 tataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 ||| | |||||||||||| ||||| || || || | || || || ||||| | Sbjct 30539 CATA--AGACATGCAAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAA 30596 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236 ||||| || ||||| || || | || |||||||| ||||| | ||||| || | Sbjct 30597 TGTGTTAACCCGGGCATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCA 30656 Query 39237 GAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTA 39296 || |||||||| || || ||| ||||| || |||| | | ||||||| | || Sbjct 30657 GAGAAGAATATTCCTTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTT 30716 Query 39297 TCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGG 39346 | || |||||| ||| |||||||| ||||| ||| |||| |||| Sbjct 30717 TTGTCGGCAATCCATCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGG 30766 >seq38 Length=203164 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | | |||||||| ||||| ||||||||||| ||||| ||||| Sbjct 170981 TACCGGCAAAAATAAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGG 170922 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || |||||||| | || ||||| ||||| || || |||||||| | Sbjct 170921 CTTTTACATTTTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTAA 170862 Query 172048 ATGTTTTAATGAATATCTGCATTT 172071 || |||| ||| || ||||||| Sbjct 170861 GAGTCTTAACGAAAATTTGCATTT 170838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905082789317400