Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq5 156 5e-33 seq3 95.1 2e-14 seq1 82.4 1e-10 >seq5 Length=897882 Score = 156 bits (172), Expect = 5e-33 Identities = 401/600 (67%), Gaps = 23/600 (4%) Strand=Plus/Plus Query 172399 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 172458 |||||||||| ||| ||||| || ||| || ||||| ||||||||| ||||| Sbjct 895084 AAGAACTTTTGTGGTTTATTTCGGGAAGCACTAATGCAAAAGAATTAAATGCCCGAGGTG 895143 Query 172459 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 172518 |||| ||||| ||| ||||| | | | ||| | ||| || |||||||||| Sbjct 895144 TTAAGATTTGGGATGCAAATGGAAGTAGACAGTTTCTTGATAGTCTAGGATTTACTGAAA 895203 Query 172519 GAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 172578 || |||||||||||| || || ||||||| || |||||||||||| || ||| ||| Sbjct 895204 GACCAGAAGGTGATTTGGGACCTGTTTATGGGTTCCAATGGAGACATTTTGGTGCTAAAT 895263 Query 172579 AT-ATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAA--CTA 172635 || | || | |||| | || ||||||||| ||||||| || ||| || |||| || Sbjct 895264 ATGAGGGAGT-TGATGCTGACTACACAGGAAAAGGAGTTGATCAACTA--GCAAATGTTA 895320 Query 172636 TTAATACTTTACAAAACAACC---CAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATG 172692 || | || | ||||||| | ||| |||| || ||| || ||||||| Sbjct 895321 TTGACCAAATAAAGAACAACCCTTCTTCAAGAAGAATTATCTTATCTG---CTTGGAATC 895377 Query 172693 TACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCA 172752 | || | |||| | |||||||| | ||||| || ||||| ||| ||||||||||| Sbjct 895378 CATCTGATCTTGGTGAAATGGTTTTGCCTCCATGTCATACACTAGTTCAATTTTATGT-- 895435 Query 172753 GaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGC--TGATTTAGGATTGGG 172810 || | ||| |||||| || |||||| | |||| |||| | || ||||| Sbjct 895436 -TCAAGATGGGGAGTTAAGTTGTCACTTGTATCAACG--CAGCGGTGATGTTGGTTTGGG 895492 Query 172811 GGTACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTG--TTAAGTAAATGGTGC 172868 || || | ||| |||| | || ||| |||| | | | || | | || | ||| Sbjct 895493 AGTTCCATTTAACATTGCTTCGTACTCACTTTTGACTCATATGATTGCAAAAATTTGTGG 895552 Query 172869 AATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCAT 172928 || |||| | || | ||| |||| ||| |||| |||| ||| | ||| ||| ||| Sbjct 895553 AA--TAACAACTGGTGATTTTGTTCACACTATTGGCGATGCTCATATTTATAAAAACCAT 895610 Query 172929 GTTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATTT 172988 ||| || | || ||||| | || |||| || | ||||||| ||| |||| Sbjct 895611 ACTGATGCTCTGAAACAACAATTGACTCGAGAACCCTACCCATTTCCAACAATTAGATTT 895670 >seq3 Length=1139157 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 194599 GGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGT 194658 || |||| |||||| || ||||| ||||||||| ||||||||||||||||||| Sbjct 413469 GGACCAATTTATTATCAAAAACTTAAGCACATGGTTTTGGATAAAATGCATGCTAGAGCA 413528 Query 194659 CATGGGCAAGTAACTACTTT-ACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGG 194717 |||| || || ||| ||| || ||||| | | ||| | ||| | ||| || Sbjct 413529 AGAGGGCCTGTTGCTGTTTTGACA-CGTCAACCTACTGAAGGTAGAGCTCGTGATGGTGG 413587 Query 194718 TTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAAT--TC 194775 ||||||||| ||||||||||||| ||| || || ||| |||| || || || | Sbjct 413588 TTTAAGATTAGGAGAAATGGAAAGAGATTGCCTTATAGCATATGGAGC--ATCGATGCTT 413645 Query 194776 TTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGT 194835 |||| ||| || | | | | ||| |||| |||||||| || ||||| | | |||| Sbjct 413646 TTAATGGAACGATTAATGGTTTCTTCAGATCAATTTCAAGTTGACGTTTGTTCCGTATGT 413705 Query 194836 GG 194837 || Sbjct 413706 GG 413707 >seq1 Length=1686976 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 166001 CATGGTGAACAAAATTT-ATG-TGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTA 166058 |||||||||||| ||| ||| ||| |||| || || || || || |||| ||||| Sbjct 471720 CATGGTGAACAATCTTTGATGATGA--CTATTATCAACTTGGCTCAGGATTACGTTGGAT 471777 Query 166059 CAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTA 166118 |||||||||| ||| | || ||||||||| ||||| ||| | ||||||||| Sbjct 471778 CAAATAATATTAACTTATTGTTGCCCATTGGTCAATTCGGTACTAGACTTCAAGGAGGTA 471837 Query 166119 AAGATTCTGCTGCATCAAGATATATTTATAC 166149 ||||||| ||| || | | ||||||| ||| Sbjct 471838 AAGATTCAGCTTCACCTCGTTATATTTTTAC 471868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632452417517640