Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4548 159 3e-34 seq3059 156 4e-33 seq4 118 1e-21 seq64 114 1e-20 seq1 111 1e-19 seq38 98.7 9e-16 >seq4548 Length=666 Score = 159 bits (176), Expect = 3e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | || || ||||||||||| ||||| |||||| | | Sbjct 457 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 516 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||||||||||||||||||||| || || || || || Sbjct 517 GACACCATTGACAACGTTAAGTC-AAAGATCCAAGACAAAGAAGGTATTCCACCAGACCA 575 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||| ||||| || |||||||| |||||| |||| | || ||||| || Sbjct 576 ACAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAA 635 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| |||||||| || || || || ||||| Sbjct 636 CATCCAAAAGGAGTCAACTCTTCATTTGGT 665 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| ||||||| |||| || || || || || || ||||| ||| | | Sbjct 1 ATGCAGATCTTTGTTAAAACTTTAACTGGAAAGACCATCACTCTTGAAGTGGAACCTTCT 60 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| ||||||||||||||||| || || || ||| Sbjct 61 GATACCATTGATAACGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 120 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| || || || ||||| || |||||| |||| | || || || ||| Sbjct 121 CAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAAC 180 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || |||||||| | || | || ||||| Sbjct 181 ATTCAAAAGGAATCAACTCTCCACTTGGTTCTCCGTCTTCGTGGAGG 227 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || | || || |||||||| || || || ||||| | | Sbjct 229 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAAACTATCACTCTTGAGGTAGAGCCTTCT 288 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| |||| ||||||||||||||| ||||| || || || || Sbjct 289 GACACCATTGATAACGTTAAGTCAAA-GATCCAAGACAAAGAGGGAATCCCACCAGACCA 347 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||| || || || ||||| || |||||| |||| | || || || || Sbjct 348 ACAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAA 407 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || |||||||| | || | || ||||| Sbjct 408 CATCCAGAAAGAGTCAACCCTTCACTTGGTCCTCCGTCTCCGTGGAGG 455 >seq3059 Length=2231 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | || || ||||||||||| ||||| |||||| | | Sbjct 746 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 805 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||||||||||||||||||||| || || || || || Sbjct 806 GACACCATTGACAACGTTAAGTC-AAAGATCCAAGACAAAGAAGGTATTCCACCAGACCA 864 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | || |||||||| || |||||||| |||||| |||| | || || || || Sbjct 865 ACAAAGATTAATCTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAA 924 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || || || | || | || ||||| Sbjct 925 CATTCAAAAGGAGTCAACCCTTCATTTAGTTCTCCGTCTCCGTGGAGG 972 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | || || ||||||||||| ||||| |||||| | | Sbjct 518 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 577 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||||||||||||||||||||| || || || || || Sbjct 578 GACACCATTGACAACGTTAAGTC-AAAGATCCAAGACAAAGAAGGTATTCCACCAGACCA 636 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||| ||||| || |||||||| |||||| |||| | || || || || Sbjct 637 ACAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAA 696 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || || ||||| | || | || ||||| Sbjct 697 CATCCAGAAAGAGTCAACCCTTCATTTGGTCCTCCGTCTCCGTGGAGG 744 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||| || || || ||||| || || |||||| | || Sbjct 62 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCC 121 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| ||||||||||||||||| || || || ||| Sbjct 122 GACACTATTGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 181 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || ||||| || ||||| || || ||| |||| | || ||||| ||| Sbjct 182 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 241 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || || ||||| | || | || ||||| Sbjct 242 ATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCCGTCTCCGTGGAGG 288 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||| || || || ||||| || || |||||| | | Sbjct 974 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCT 1033 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || |||||||| ||||| || || || || ||| Sbjct 1034 GACACCATCGATAATGTCAAGTCGAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAA 1093 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || ||||| || || ||| |||| | || |||||||| Sbjct 1094 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCCGATTATAAT 1153 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || ||||| | || | || ||||| Sbjct 1154 ATTCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTCCGTGGAGG 1200 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | || || ||||||||||| ||||| |||||| | | Sbjct 290 ATGCAAATATTTGTCAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 349 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| ||||| || || || || || || |||||| Sbjct 350 GACACCATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAA 409 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || |||||||| || || || || || ||| |||| | || || || ||| Sbjct 410 CAAAGATTAATCTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTCTCTGACTACAAC 469 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || || ||||| | || | || ||||| Sbjct 470 ATCCAGAAAGAGTCAACCCTTCATTTGGTCCTCCGTCTCCGTGGAGG 516 >seq4 Length=926804 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| |||| || | || || ||||| || || || || ||||| | Sbjct 390499 ACCATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCT 390558 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| | || | || ||| ||||| ||||| ||||||||||| || || ||| Sbjct 390559 TCTGATACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGAT 390618 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 |||||| | || || ||||| || ||||| || || ||| |||| | || ||||| Sbjct 390619 CAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTAC 390678 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || || ||||| | || | || ||||| Sbjct 390679 AACATCCAAAAGGAGTCAACCCTTCATTTGGTTCTTCGTCTTCGTGGAGG 390728 >seq64 Length=153875 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 139060 TCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCG 139119 || |||||| | |||| | ||| || ||| || || || || ||||| || || Sbjct 122865 TCAACAAATCTATTGAGAGCAATAGACCCTAGATTACATACAGCAACTTCATCTGGTGAA 122806 Query 139120 CTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGA 139179 | ||||| || || |||| ||| | |||| ||||||||| || || | |||||||||| Sbjct 122805 CAATATTCAACGATCTCGGTACAGAGATTAGAACACTTGATAGTTCCAAGATTTTGTTGA 122746 Query 139180 TTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || ||||| || |||||| |||||| |||| ||| || |||||||||||||| Sbjct 122745 TTACTTTTCCGATTACAATGATCTTTATAAACCATGTAAGGTGTGCCAGTTTC 122693 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 138139 TTTAGCAGTGAAGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTC 138198 ||| | |||| |||||||| |||||||| || | ||| || |||| ||||| ||||| Sbjct 123729 TTTTGGAGTGCTGATTTATCAACAGTAAATTTAACAGCACCAACGGCAGGTTTAGTTCTT 123670 Query 138199 AGATAATACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGT 138258 | || ||||| ||||||||||| ||| || ||| ||| | || || ||| | Sbjct 123669 AAGTAGTACATCCCCGTTTTTAATCCACGTTTCCAACCGTGAAAATGCATAGAACTACAA 123610 Query 138259 AACGCGTAAGTCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCG 138318 | || || | ||| | |||| | | ||||| ||||| ||||| |||||||| Sbjct 123609 ATTGCATATGATGGTCTAGCCACATGAAGGTTAAGGGATTGTGATTGATCAATGAAAGCA 123550 Query 138319 CCTCGATCAATGGCCATGTTAATTAAATTTTT 138350 || |||||| ||||| | ||| | || ||| Sbjct 123549 CCACGATCAGCAGCCATCTCAATAATATCTTT 123518 >seq1 Length=1686976 Score = 111 bits (122), Expect = 1e-19 Identities = 320/489 (65%), Gaps = 5/489 (1%) Strand=Plus/Plus Query 139129 ACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTT 139188 |||||||| ||||| | ||| ||| || || || ||||||||||||||||| ||||| Sbjct 915574 ACAATTTCAGCACAAAGATTTGAACATTTTATTGTTCCTAAATTTTGTTGATTACTTTTA 915633 Query 139189 CGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATA 139248 ||||||||| ||| |||||||||||||| || | || || || | || | || | Sbjct 915634 CGGTTACAATGATCCTTGTAAAGCATATATGGAATACCCGTCTCTATCTGAGATTCACAA 915693 Query 139249 ATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTAC 139308 || | | | | || |||| || ||| | ||| | | || || || Sbjct 915694 ATCTTCTGCCAAATATATCTGGCTTTTACTTGTTTCCTATAACGATTTTCATTTTCATAT 915753 Query 139309 TTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCA 139368 | | |||| |||| || || ||||| | ||| |||| | |||| | | | Sbjct 915754 TGTACGTAAAGTTTATCAAAATCATCACCAAAACAATCATCAAGACCCGGACATTCATTA 915813 Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTT-GACGCGCCTCATGAACAGATCCGGAAT 139427 |||||||| | |||||| | | |||| || || || |||| || | ||| |||| Sbjct 915814 GGACACATTAACGACCA-ATGTGAATCGCTTTCAACACGTTTCATAAATAAATCTGGAAC 915872 Query 139428 CCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCAT 139487 ||| | || | | |||||||| || | | ||||| | || |||| ||| | Sbjct 915873 CCAAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTCCTGTGTTCTTTTTTAA 915932 Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC--- 139544 | ||| || | | || || || ||||||||||||| ||| || || | ||| || Sbjct 915933 CTCAAGAAATTGGATAATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCACCAGG 915992 Query 139545 TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604 | | |||||||||||||| || | || |||| | ||||| | || || ||||| || Sbjct 915993 TCTTTTATTGCCACCTTGATCAACATAACGAACAGTACTATTGTAAACACGTAACATTGG 916052 Query 139605 CTCCAGACC 139613 ||| ||| Sbjct 916053 AACCAAACC 916061 Score = 82.4 bits (90), Expect = 7e-11 Identities = 183/272 (67%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 138149 AAGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACA 138208 |||||||||| ||| |||| || | | || || || ||||| ||||| | |||||||| Sbjct 914597 AAGATTTATCAACACTAAATTTCACAGGATTTGCTGCCGGTTTAGTTCTTAAATAATACA 914656 Query 138209 TTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAG 138268 |||| ||||| || ||||||| ||| | || | || || ||| | || | |||| Sbjct 914657 TTCCTGTTTTCAAACCATTTTTCCAACCATAAAAATGCATTGAACTACATATTCCATAAG 914716 Query 138269 TCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAA 138328 | ||| | | | | |||| |||||| ||||| | || | || ||||||| Sbjct 914717 TTGGTCTATTTACATGAAGATTAAGTGATTGAGATTGATCAACAAAGGGACCACGATCAA 914776 Query 138329 TGGCCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAA 138388 | ||||| | ||| | | ||| | || ||||| || || || || || || | | Sbjct 914777 TTGCCATTTCAATAATAGCTTTTTGTGGAATTTCCCAAACAGTTTTATAAAGTTCTCTGA 914836 Query 138389 TATGTCGCGGTATTGTTGCA-ATATTTTGAAT 138419 ||||| || | | | ||| ||||||||||| Sbjct 914837 TATGTAATGG-AATATCGCATATATTTTGAAT 914867 >seq38 Length=203164 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || ||||| ||||| || || ||||| || |||| | Sbjct 170840 ATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGA-GCCATC 170898 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| |||||| || |||||||||||||||||||| || || || || Sbjct 170899 AGATACCATCGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCAGACCA 170958 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||||| | || |||||||| Sbjct 170959 ACAACGTCTTATTTTTGCCGG 170979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449871151644840