Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3059 95.1 8e-15 seq4548 93.3 3e-14 >seq3059 Length=2231 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| ||||| ||||| || || || | | |||| || ||||| ||||| || || Sbjct 1165 CTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAA 1106 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||| |||||| | || | ||| |||||||| | ||||| ||||| | Sbjct 1105 AATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATTTTCGACTTGAC--A 1048 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| ||| | || || |||| || ||||||||||| || | |||| Sbjct 1047 T--TATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTCTTTCCAGTTAAAGTCT 990 Query 34962 TTACAAAGATCTGCAT 34977 | || ||||||||||| Sbjct 989 TGACGAAGATCTGCAT 974 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| |||| ||| ||| ||||| ||||| ||||| || || | | |||| Sbjct 501 AGGACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCT 442 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||| | || ||| || ||| | || | ||||||||| || Sbjct 441 TCAAGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCT 382 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | || || || | || || || Sbjct 381 TGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTT 322 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| ||||| || ||||| Sbjct 321 TTTCCAGTCAAGGTCTTGACAAATATTTGCAT 290 >seq4548 Length=666 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| ||||| || || | | |||| || ||||| ||||| ||||| Sbjct 191 TCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCGAGTTGTTTTCCAGCGAAA 132 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||| |||||| | || | || || ||||| | || ||| |||||| Sbjct 131 ATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTA 72 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| | || || |||| || ||||||||||| || | || || ||| Sbjct 71 TCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTTTCCAGTTAAAGTTTTAACA 12 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 11 AAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325674132001157