Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 8e-16 seq3059 95.1 1e-14 seq4548 84.2 2e-11 >seq4 Length=926804 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || ||||| |||||||||||||| || | || ||| || Sbjct 390502 ATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCT 390561 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| ||||||||||| | || ||||| Sbjct 390562 GATACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAA 390621 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| || ||||| || || || | | ||| | | || |||||| Sbjct 390622 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 390681 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 390682 ATCCAAAAGGAGTCAAC 390698 >seq3059 Length=2231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||||||||| || || ||||||||||| | ||| || || | Sbjct 1430 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1489 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || ||| |||||| ||||| || || | || || || Sbjct 1490 GACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAA 1549 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| || |||||||| ||||| | | ||| | | || |||||| Sbjct 1550 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAAC 1609 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 1610 ATCCAAAAGGAGTCAAC 1626 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||||||||| || || ||||||||||| | ||| || || | Sbjct 1202 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1261 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || ||| |||||| ||||| || || | || ||||| Sbjct 1262 GACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAA 1321 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| || ||||| || || || | | ||| | | || |||||| Sbjct 1322 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 1381 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 1382 ATCCAAAAGGAGTCAAC 1398 >seq4548 Length=666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||||||||| || || ||||| || | ||| ||| || Sbjct 1 ATGCAGATCTTTGTTAAAACTTTAACTGGAAAGACCATCACTCTTGAAGTGGAACCTTCT 60 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||||| || |||||||| | || || || Sbjct 61 GATACCATTGATAACGTCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 120 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| || || ||||| || ||||| | | ||| | | ||||||||| Sbjct 121 CAAAGATTGATTTTCGCTGGAAAACAACTCGAGGATGGAAGAACTCTTTCTGACTACAAC 180 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||| || || | ||| |||| Sbjct 181 ATTCAAAAGGAATCAACTCTCCACTTGGT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398853937254367