Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3059 136 6e-27 seq4 127 3e-24 seq5 102 1e-16 >seq3059 Length=2231 Score = 136 bits (150), Expect = 6e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || |||||||| |||||| |||| ||||||| | || Sbjct 1203 TGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCCG 1262 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| ||| || || ||| ||| || || || ||||| ||||||| Sbjct 1263 ACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAAC 1322 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||| | || ||| ||||| | | ||||| || | Sbjct 1323 AAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAACA 1382 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || ||| | ||||| || Sbjct 1383 TCCAAAAGGAGTCAACTCTTCATTTGGT 1410 Score = 123 bits (136), Expect = 4e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || ||||| ||||| || |||||| |||| ||||||| | | Sbjct 975 TGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCTG 1034 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||||| ||| || ||||| || ||||| || |||| Sbjct 1035 ACACCATCGATAATGTCAAGTCGAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAAC 1094 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||| | || ||| ||||| | | |||||||||| Sbjct 1095 AAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCCGATTATAATA 1154 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || ||| | ||||| || Sbjct 1155 TTCAAAAGGAGTCAACTCTTCATTTGGT 1182 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || || || || |||||||| |||||| | || ||||||| | | Sbjct 291 TGCAAATATTTGTCAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCTG 350 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| || || ||| ||| || || || ||||| ||||||| Sbjct 351 ACACCATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAAC 410 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || || ||| | || ||| ||||| | | || || || | Sbjct 411 AAAGATTAATCTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTCTCTGACTACAACA 470 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || | ||||| || Sbjct 471 TCCAGAAAGAGTCAACCCTTCATTTGGT 498 >seq4 Length=926804 Score = 127 bits (140), Expect = 3e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||| ||||| || ||| |||| ||||| | | | Sbjct 390503 TGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCTTCTG 390562 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||| || ||| ||||||||| || ||||| ||||||| Sbjct 390563 ATACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAAC 390622 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||| | || ||| ||||| | | ||||| || | Sbjct 390623 AAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAACA 390682 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || || | ||||| || Sbjct 390683 TCCAAAAGGAGTCAACCCTTCATTTGGT 390710 >seq5 Length=897882 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| ||||| ||||||||||| ||| |||| || || || Sbjct 723799 TGCAAATTTTCGTAAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAGGCCTCCG 723858 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||| || | ||||| || | ||| || || |||||||| |||||||| || || | Sbjct 723859 ATACTGTTGATAATGTTAAGACTAAGATCCATGAAAAAGAAGGTATTCCACCAGACCAGC 723918 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || | || |||||||| |||| Sbjct 723919 AACGGCTTATTTTTGCCGGTA 723939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786120183242760