Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq5 140 4e-28 seq3 86.0 8e-12 >seq5 Length=897882 Score = 140 bits (154), Expect = 4e-28 Identities = 399/604 (66%), Gaps = 17/604 (3%) Strand=Plus/Plus Query 168519 ATTCTTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGAT 168578 ||| || |||||||||| ||| |||| || ||| || ||||| ||||||||| Sbjct 895077 ATTGTTGAAGAACTTTTGTGGTTTATTTCGGGAAGCACTAATGCAAAAGAATTAAATGCC 895136 Query 168579 ATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTT 168638 ||||||||| ||||| | | ||||| | | | ||| | ||| || ||| Sbjct 895137 CGAGGTGTTAAGATTTGGGATGCAAATGGAAGTAGACAGTTTCTTGATAGTCTAGGATTT 895196 Query 168639 ACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGA 168698 || |||||| |||||||||||| || || ||||||| || |||||||||||| || Sbjct 895197 ACTGAAAGACCAGAAGGTGATTTGGGACCTGTTTATGGGTTCCAATGGAGACATTTTGGT 895256 Query 168699 GCTCAATAT-ATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCA 168757 ||| ||||| | || | |||| | || ||||| ||| ||||||| || ||| || || Sbjct 895257 GCTAAATATGAGGGAGT-TGATGCTGACTACACAGGAAAAGGAGTTGATCAACTA--GCA 895313 Query 168758 AA--CTATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGTTGG 168815 || ||| | || | ||||| || |||||||| | | | |||| Sbjct 895314 AATGTTATTGACCAAATAAAGAACAACCCTTCTTCAAGAAGAATTATCTTATCTGCTTGG 895373 Query 168816 GATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTAT 168875 || | | | |||| | |||||||| | || || ||||| || |||| ||||||||| Sbjct 895374 AATCCATCTGATCTTGGTGAAATGGTTTTGCCTCCATGTCATACACTAGTTCAATTTTAT 895433 Query 168876 GTAAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGC--TGATTTAGGAT 168933 || || | ||| |||||| ||||||||| | |||| |||| | || | Sbjct 895434 GT---TCAAGATGGGGAGTTAAGTTGTCACTTGTATCAACG--CAGCGGTGATGTTGGTT 895488 Query 168934 TAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAACACTTGTGCT--AAGTAAATG 168991 | ||||| || | ||| |||| | || ||| |||| || | | || | | || | Sbjct 895489 TGGGAGTTCCATTTAACATTGCTTCGTACTCACTTTTGACTCATATGATTGCAAAAATTT 895548 Query 168992 GTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAA 169051 ||| || | || |||| | ||| |||| ||| |||| |||| ||| | ||| ||| Sbjct 895549 GTGGAA--TAACAACTGGTGATTTTGTTCACACTATTGGCGATGCTCATATTTATAAAAA 895606 Query 169052 CCATGTTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAA 169111 |||| ||| || | || ||||||| || |||| || | ||||||| ||| Sbjct 895607 CCATACTGATGCTCTGAAACAACAATTGACTCGAGAACCCTACCCATTTCCAACAATTAG 895666 Query 169112 ATTT 169115 |||| Sbjct 895667 ATTT 895670 >seq3 Length=1139157 Score = 86.0 bits (94), Expect = 8e-12 Identities = 168/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 193803 GGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGT 193862 || |||| ||||||||| ||||| || |||||| ||||||||||||||||||| Sbjct 413469 GGACCAATTTATTATCAAAAACTTAAGCACATGGTTTTGGATAAAATGCATGCTAGAGCA 413528 Query 193863 CATGGACAAGTGACTACTTT-ACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGG 193921 || | || || ||| ||| || ||||| | | ||| | ||| | ||| || Sbjct 413529 AGAGGGCCTGTTGCTGTTTTGACA-CGTCAACCTACTGAAGGTAGAGCTCGTGATGGTGG 413587 Query 193922 TTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTC-T 193980 ||||||||| ||||||||||| | ||| || || ||| |||| || || || | | Sbjct 413588 TTTAAGATTAGGAGAAATGGAAAGAGATTGCCTTATAGCATATGGAGC--ATCGATGCTT 413645 Query 193981 TGAAT-GAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGT 194039 | ||| ||| || | | | | ||| |||| |||||||| || ||||| | | |||| Sbjct 413646 TTAATGGAACGATTAATGGTTTCTTCAGATCAATTTCAAGTTGACGTTTGTTCCGTATGT 413705 Query 194040 GG 194041 || Sbjct 413706 GG 413707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635140259496840