Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq5 105 9e-18 seq1 95.1 2e-14 >seq5 Length=897882 Score = 105 bits (116), Expect = 9e-18 Identities = 372/573 (65%), Gaps = 11/573 (2%) Strand=Plus/Plus Query 180392 ACAACaaaaaaaaTAGTTTATAAAAATATTCTTAAAGAATTATTATGGATAATGAAAGGT 180451 ||||| ||||||| ||| ||| |||| || ||||| | || ||| | || || Sbjct 895050 ACAACTAAAAAAACGTTTTGGAAAGGTATTGTTGAAGAACTTTTGTGGTTTATTTCGGGA 895109 Query 180452 TTAACAAATTCTAATTTGTTAAATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCG 180511 || ||| | || ||||||| |||||||| | ||| ||| ||||| Sbjct 895110 AGCACTAATGCAAAAGAATTAAATGCCCGAGGTGTTAAGATTTGGGATGCAAATGGAAGT 895169 Query 180512 CGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGAAAAGAAGGTGATTTAGGACCAATT 180571 | ||||| | ||| | |||||| | || |||||||||||| ||||| || Sbjct 895170 AGACAGTTTCTTGATAGTCTAGGATTTACTGAAAGACCAGAAGGTGATTTGGGACCTGTT 895229 Query 180572 TATGGATTTCAATGGAGACATGCAGGAGCTCAATAT-ATTGACTGTGATACCAACTATAT 180630 ||||| || |||||||||||| || ||| ||||| | || | |||| | |||| | Sbjct 895230 TATGGGTTCCAATGGAGACATTTTGGTGCTAAATATGAGGGAGT-TGATGCTGACTACAC 895288 Query 180631 CGGGCAAGGTATAGACCAATTAAGCCAA-GTTATAGAAACTATAAAAAATAATCCCGAAT 180689 || |||| | || ||| | ||| || ||||| || ||||| || || || | Sbjct 895289 AGGAAAAGGAGTTGATCAACT-AGCAAATGTTATTGACCAAATAAAGAACAACCCTTCTT 895347 Query 180690 GCCGAAGAATAATCATAGATAGTTGGAATGTATCACAATTACCAGATATGGCTCTTCCAC 180749 ||||||| ||| || | ||||||| ||| | | || |||| | | || | Sbjct 895348 CAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGGTGAAATGGTTTTGCCTC 895407 Query 180750 CATGTCACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCAATTGT 180809 ||||||| | || |||||||||||| | || | ||| ||| || |||| Sbjct 895408 CATGTCATACACTAGTTCAATTTTATGTTCAAGAT---GGGGAGTTAAGTTGTCACTTGT 895464 Query 180810 ATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTCATTTT 180869 ||||| | | ||| | || || || || |||| ||| ||||||| || ||| ||| Sbjct 895465 ATCAACGCAGCGGTGATGTTGGTTTGGGAGTTCCATTTAACATTGCTTCGTACTCACTTT 895524 Query 180870 TG--GTATGTGTTCTCTCAAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTT 180927 || || || | | ||| | ||| || |||| |||| | ||| |||||||| | Sbjct 895525 TGACTCATATGATTGCAAAAATTTGTGGAA--TAACAACTGGTGATTTTGTTCACACTAT 895582 Query 180928 TGGGGATGTTCATGTATATTCTAACCATATTGA 180960 ||| |||| |||| | ||| ||||||| ||| Sbjct 895583 TGGCGATGCTCATATTTATAAAAACCATACTGA 895615 >seq1 Length=1686976 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 172937 CATGGTGAACAAAACCTTTG-TGAA-ACTATAATAAAATTTGCACAGGATTTTGTAGGTA 172994 |||||||||||| ||||| ||| ||||| || || || || ||||||| || || Sbjct 471720 CATGGTGAACAAT--CTTTGATGATGACTATTATCAACTTGGCTCAGGATTACGTTGGAT 471777 Query 172995 CAAATAACATAACATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTA 173054 ||||||| || | ||| | || |||||| || |||||||||||| ||||||||| Sbjct 471778 CAAATAATATTAACTTATTGTTGCCCATTGGTCAATTCGGTACTAGACTTCAAGGAGGTA 471837 Query 173055 AAGATTCAGCCGCATCAAGGTATATTTATACTAAA 173089 |||||||||| || | | ||||||| |||| || Sbjct 471838 AAGATTCAGCTTCACCTCGTTATATTTTTACTCAA 471872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655241477727000